Analysis of interatomic Contacts of Structural Units in PDB entry:
3MB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MB8 entry

There are 2 chains in PDB entry 3MB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3TYR 250
B
 LEU 3TYR 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3MB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
29 38Right-handed alpha
Helix 3
3
A
72 86Right-handed alpha
Helix 4
4
A
120 127Right-handed alpha
Helix 5
5
A
136 151Right-handed alpha
Helix 6
6
A
174 180Right-handed alpha
Helix 7
7
A
188 199Right-handed alpha
Helix 8
8
A
212 219Right-handed 310
Helix 9
9
A
225 249Right-handed alpha
Helix 10
10
B
16 20Right-handed 310
Helix 11
11
B
29 38Right-handed alpha
Helix 12
12
B
72 86Right-handed alpha
Helix 13
13
B
120 127Right-handed alpha
Helix 14
14
B
136 151Right-handed alpha
Helix 15
15
B
174 179Right-handed alpha
Helix 16
16
B
188 199Right-handed alpha
Helix 17
17
B
212 219Right-handed 310
Helix 18
18
B
225 249Right-handed alpha
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There are 4 sheets in PDB entry 3MB8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 49first strand
Strand 2
A
52 59anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
23 27parallel
Strand 5
A
90 99parallel
Strand 6
A
184 186anti-parallel
Strand 7
A
155 161parallel
Strand 8
A
110 118parallel
Strand 9
A
133 134anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 49first strand
Strand 2
A
52 59anti-parallel
Strand 3
A
62 68anti-parallel
Strand 4
A
23 27parallel
Strand 5
A
90 99parallel
Strand 6
A
202 209parallel
Strand 7
A
110 118anti-parallel
Strand 8
A
133 134anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 49first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
62 68anti-parallel
Strand 4
B
23 27parallel
Strand 5
B
90 99parallel
Strand 6
B
184 186anti-parallel
Strand 7
B
155 161parallel
Strand 8
B
110 118parallel
Strand 9
B
133 134anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 49first strand
Strand 2
B
52 59anti-parallel
Strand 3
B
62 68anti-parallel
Strand 4
B
23 27parallel
Strand 5
B
90 99parallel
Strand 6
B
202 211parallel
Strand 7
B
110 118anti-parallel
Strand 8
B
133 134anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il