Analysis of interatomic Contacts of Structural Units in PDB entry:
3MBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MBB entry

There are 4 chains in PDB entry 3MBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 58GLY 248
A
 PRO 250HIS 508
B
 ILE 57GLY 248
B
 PRO 250VAL 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3MBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
76 97Right-handed alpha
Helix 2
2
A
108 123Right-handed alpha
Helix 3
3
A
133 151Right-handed alpha
Helix 4
4
A
152 157Right-handed 310
Helix 5
5
A
167 188Right-handed alpha
Helix 6
6
A
202 212Right-handed alpha
Helix 7
7
A
227 235Right-handed alpha
Helix 8
8
A
256 267Right-handed alpha
Helix 9
9
A
281 288Right-handed alpha
Helix 10
10
A
326 331Right-handed alpha
Helix 11
11
A
355 395Right-handed alpha
Helix 12
12
A
416 427Right-handed alpha
Helix 13
13
A
445 450Right-handed 310
Helix 14
14
A
452 471Right-handed alpha
Helix 15
15
A
478 488Right-handed alpha
Helix 16
16
A
489 505Right-handed alpha
Helix 17
17
B
76 97Right-handed alpha
Helix 18
18
B
108 122Right-handed alpha
Helix 19
19
B
133 151Right-handed alpha
Helix 20
20
B
152 157Right-handed 310
Helix 21
21
B
167 188Right-handed alpha
Helix 22
22
B
202 212Right-handed alpha
Helix 23
23
B
227 235Right-handed alpha
Helix 24
24
B
256 267Right-handed alpha
Helix 25
25
B
281 288Right-handed alpha
Helix 26
26
B
326 331Right-handed alpha
Helix 27
27
B
355 394Right-handed alpha
Helix 28
28
B
416 426Right-handed alpha
Helix 29
29
B
445 450Right-handed 310
Helix 30
30
B
452 471Right-handed alpha
Helix 31
31
B
478 488Right-handed alpha
Helix 32
32
B
489 505Right-handed alpha
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There are 6 sheets in PDB entry 3MBB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
320 324anti-parallel
Strand 3
A
304 307anti-parallel
Strand 4
A
270 275parallel
Strand 5
A
239 245parallel
Strand 6
A
193 197parallel
Strand 7
A
214 218parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
345 347anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
407 411anti-parallel
Strand 3
A
439 443anti-parallel
Strand 4
A
432 434anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 165first strand
Strand 2
B
320 324anti-parallel
Strand 3
B
304 307anti-parallel
Strand 4
B
270 275parallel
Strand 5
B
239 245parallel
Strand 6
B
193 197parallel
Strand 7
B
214 218parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
345 347anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 400first strand
Strand 2
B
407 411anti-parallel
Strand 3
B
439 443anti-parallel
Strand 4
B
432 434anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il