Analysis of interatomic Contacts of Structural Units in PDB entry:
3MBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MBI entry

There are 4 chains in PDB entry 3MBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1ASP 285
B
 SER -1ASP 285
C
 MET 1ASP 285
D
 MET 1ASP 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3MBI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
58 72Right-handed alpha
Helix 3
3
A
73 75Right-handed 310
Helix 4
4
A
102 114Right-handed alpha
Helix 5
5
A
125 132Right-handed 310
Helix 6
6
A
141 150Right-handed alpha
Helix 7
7
A
161 163Right-handed 310
Helix 8
8
A
164 176Right-handed alpha
Helix 9
9
A
216 229Right-handed alpha
Helix 10
10
A
246 253Right-handed alpha
Helix 11
11
A
273 285Right-handed alpha
Helix 12
12
B
9 20Right-handed alpha
Helix 13
13
B
58 72Right-handed alpha
Helix 14
14
B
73 75Right-handed 310
Helix 15
15
B
102 114Right-handed alpha
Helix 16
16
B
125 132Right-handed 310
Helix 17
17
B
141 150Right-handed alpha
Helix 18
18
B
164 176Right-handed alpha
Helix 19
19
B
216 229Right-handed alpha
Helix 20
20
B
246 253Right-handed alpha
Helix 21
21
B
273 285Right-handed alpha
Helix 22
22
C
9 20Right-handed alpha
Helix 23
23
C
58 72Right-handed alpha
Helix 24
24
C
73 75Right-handed 310
Helix 25
25
C
102 114Right-handed alpha
Helix 26
26
C
125 132Right-handed 310
Helix 27
27
C
141 150Right-handed alpha
Helix 28
28
C
161 163Right-handed 310
Helix 29
29
C
164 176Right-handed alpha
Helix 30
30
C
216 229Right-handed alpha
Helix 31
31
C
246 253Right-handed alpha
Helix 32
32
C
273 285Right-handed alpha
Helix 33
33
D
9 21Right-handed alpha
Helix 34
34
D
58 72Right-handed alpha
Helix 35
35
D
73 75Right-handed 310
Helix 36
36
D
102 112Right-handed alpha
Helix 37
37
D
125 132Right-handed 310
Helix 38
38
D
141 150Right-handed alpha
Helix 39
39
D
164 176Right-handed alpha
Helix 40
40
D
216 229Right-handed alpha
Helix 41
41
D
246 253Right-handed alpha
Helix 42
42
D
273 285Right-handed alpha
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There are 16 sheets in PDB entry 3MBI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 5first strand
Strand 2
A
49 53parallel
Strand 3
A
79 84parallel
Strand 4
A
117 121parallel
Strand 5
A
136 139parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
37 40anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 181first strand
Strand 2
A
156 159parallel
Strand 3
A
205 213parallel
Strand 4
A
233 241parallel
Strand 5
A
257 261parallel
Strand 6
A
269 271parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 188first strand
Strand 2
A
191 195anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 5first strand
Strand 2
B
49 53parallel
Strand 3
B
79 84parallel
Strand 4
B
117 121parallel
Strand 5
B
135 139parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
37 40anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 181first strand
Strand 2
B
156 159parallel
Strand 3
B
205 213parallel
Strand 4
B
233 241parallel
Strand 5
B
257 261parallel
Strand 6
B
269 271parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 188first strand
Strand 2
B
191 195anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 5first strand
Strand 2
C
49 53parallel
Strand 3
C
79 84parallel
Strand 4
C
117 121parallel
Strand 5
C
135 139parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 31first strand
Strand 2
C
37 40anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 181first strand
Strand 2
C
156 159parallel
Strand 3
C
205 213parallel
Strand 4
C
233 241parallel
Strand 5
C
257 261parallel
Strand 6
C
269 271parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 188first strand
Strand 2
C
191 195anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
49 53parallel
Strand 3
D
79 84parallel
Strand 4
D
117 121parallel
Strand 5
D
136 139parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 31first strand
Strand 2
D
37 40anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
178 181first strand
Strand 2
D
155 159parallel
Strand 3
D
205 213parallel
Strand 4
D
233 241parallel
Strand 5
D
257 261parallel
Strand 6
D
269 271parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 188first strand
Strand 2
D
191 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il