Analysis of interatomic Contacts of Structural Units in PDB entry:
3MBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MBJ entry

There is 1 chain in PDB entry 3MBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0ILE 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3MBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 33Right-handed alpha
Helix 2
2
A
62 74Right-handed alpha
Helix 3
3
A
87 102Right-handed alpha
Helix 4
4
A
125 137Right-handed alpha
Helix 5
5
A
145 154Right-handed alpha
Helix 6
6
A
162 175Right-handed alpha
Helix 7
7
A
221 236Right-handed alpha
Helix 8
8
A
239 260Right-handed alpha
Helix 9
9
A
264 268Right-handed 310
Helix 10
10
A
270 275Right-handed alpha
Helix 11
11
A
276 280Right-handed 310
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There are 3 sheets in PDB entry 3MBJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
8 12parallel
Strand 3
A
79 82parallel
Strand 4
A
107 110parallel
Strand 5
A
141 142parallel
Strand 6
A
180 187parallel
Strand 7
A
194 201anti-parallel
Strand 8
A
206 213anti-parallel
Strand 9
A
288 290anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
43 47parallel
Strand 3
A
56 58anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
119 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il