Analysis of interatomic Contacts of Structural Units in PDB entry:
3MC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MC6 entry

There are 3 chains in PDB entry 3MC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 131HIS 379
A
 TYR 381LYS 579
C
 SER 130LYS 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3MC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
144 158Right-handed alpha
Helix 2
2
A
163 167Right-handed 310
Helix 3
3
A
177 191Right-handed alpha
Helix 4
4
A
202 220Right-handed alpha
Helix 5
5
A
234 254Right-handed alpha
Helix 6
6
A
268 278Right-handed alpha
Helix 7
7
A
299 303Right-handed 310
Helix 8
8
A
330 335Right-handed alpha
Helix 9
9
A
346 351Right-handed alpha
Helix 10
10
A
352 354Right-handed 310
Helix 11
11
A
395 400Right-handed alpha
Helix 12
12
A
424 464Right-handed alpha
Helix 13
13
A
487 497Right-handed alpha
Helix 14
14
A
522 538Right-handed alpha
Helix 15
15
A
566 576Right-handed alpha
Helix 16
16
C
144 158Right-handed alpha
Helix 17
17
C
163 167Right-handed 310
Helix 18
18
C
177 191Right-handed alpha
Helix 19
19
C
202 220Right-handed alpha
Helix 20
20
C
234 254Right-handed alpha
Helix 21
21
C
268 278Right-handed alpha
Helix 22
22
C
299 303Right-handed 310
Helix 23
23
C
330 335Right-handed alpha
Helix 24
24
C
346 351Right-handed alpha
Helix 25
25
C
352 354Right-handed 310
Helix 26
26
C
395 400Right-handed alpha
Helix 27
27
C
424 464Right-handed alpha
Helix 28
28
C
487 497Right-handed alpha
Helix 29
29
C
522 538Right-handed alpha
Helix 30
30
C
569 576Right-handed alpha
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There are 4 sheets in PDB entry 3MC6. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 232first strand
Strand 2
A
389 392anti-parallel
Strand 3
A
373 377anti-parallel
Strand 4
A
339 342parallel
Strand 5
A
307 313parallel
Strand 6
A
260 264parallel
Strand 7
A
281 285parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
478 482anti-parallel
Strand 3
A
511 514anti-parallel
Strand 4
A
503 504anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 232first strand
Strand 2
C
389 392anti-parallel
Strand 3
C
373 377anti-parallel
Strand 4
C
339 342parallel
Strand 5
C
307 313parallel
Strand 6
C
260 264parallel
Strand 7
C
281 285parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
469 470first strand
Strand 2
C
478 482anti-parallel
Strand 3
C
511 514anti-parallel
Strand 4
C
503 504anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il