Analysis of interatomic Contacts of Structural Units in PDB entry:
3MC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MC8 entry

There is 1 chain in PDB entry 3MC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 217HIS 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3MC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
236 247Right-handed alpha
Helix 2
2
A
257 269Right-handed alpha
Helix 3
3
A
318 326Right-handed alpha
Helix 4
4
A
327 329Right-handed 310
Helix 5
5
A
334 352Right-handed alpha
Helix 6
6
A
407 413Right-handed alpha
Helix 7
7
A
424 437Right-handed alpha
Helix 8
8
A
467 473Right-handed alpha
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There are 3 sheets in PDB entry 3MC8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
220 230anti-parallel
Strand 3
A
286 295parallel
Strand 4
A
273 283anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 306first strand
Strand 2
A
371 376parallel
Strand 3
A
358 364anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 388first strand
Strand 2
A
457 465parallel
Strand 3
A
441 450anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il