Analysis of interatomic Contacts of Structural Units in PDB entry:
3MC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MC9 entry

There are 2 chains in PDB entry 3MC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 217GLU 381
B
 THR 217GLU 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3MC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
236 247Right-handed alpha
Helix 2
2
A
256 270Right-handed alpha
Helix 3
3
A
319 326Right-handed alpha
Helix 4
4
A
327 329Right-handed 310
Helix 5
5
A
334 352Right-handed alpha
Helix 6
6
B
236 247Right-handed alpha
Helix 7
7
B
256 270Right-handed alpha
Helix 8
8
B
319 326Right-handed alpha
Helix 9
9
B
327 329Right-handed 310
Helix 10
10
B
334 352Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3MC9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 255first strand
Strand 2
A
221 230anti-parallel
Strand 3
A
286 295parallel
Strand 4
A
273 283anti-parallel
Strand 5
B
379 380parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
370 376parallel
Strand 3
A
358 359anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
370 376parallel
Strand 3
A
364 365anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
B
273 283parallel
Strand 3
B
286 295anti-parallel
Strand 4
B
221 230parallel
Strand 5
B
254 255anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 306first strand
Strand 2
B
370 376parallel
Strand 3
B
358 359anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 306first strand
Strand 2
B
370 376parallel
Strand 3
B
364 365anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il