Analysis of interatomic Contacts of Structural Units in PDB entry:
3MCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MCP entry

There is 1 chain in PDB entry 3MCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1LEU 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3MCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 60Right-handed alpha
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
98 108Right-handed alpha
Helix 4
4
A
115 127Right-handed alpha
Helix 5
5
A
128 140Right-handed alpha
Helix 6
6
A
191 195Right-handed 310
Helix 7
7
A
197 209Right-handed alpha
Helix 8
8
A
216 225Right-handed alpha
Helix 9
9
A
231 258Right-handed alpha
Helix 10
10
A
265 269Right-handed 310
Helix 11
11
A
270 286Right-handed alpha
Helix 12
12
A
306 316Right-handed alpha
Helix 13
13
A
346 363Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 3MCP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
35 38anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
19 26anti-parallel
Strand 3
A
9 14anti-parallel
Strand 4
A
68 72parallel
Strand 5
A
111 114parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
83 84anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
158 164anti-parallel
Strand 3
A
148 154anti-parallel
Strand 4
A
260 264parallel
Strand 5
A
337 342parallel
Strand 6
A
300 303parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
329 332anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il