Analysis of interatomic Contacts of Structural Units in PDB entry:
3MD9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MD9 entry

There are 2 chains in PDB entry 3MD9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 26MET 278
B
 ALA 26MET 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 3MD9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 43Right-handed alpha
Helix 2
2
A
45 47Right-handed 310
Helix 3
3
A
59 65Right-handed 310
Helix 4
4
A
75 81Right-handed alpha
Helix 5
5
A
95 105Right-handed alpha
Helix 6
6
A
117 133Right-handed alpha
Helix 7
7
A
134 151Right-handed alpha
Helix 8
8
A
179 188Right-handed alpha
Helix 9
9
A
204 212Right-handed alpha
Helix 10
10
A
220 227Right-handed alpha
Helix 11
11
A
228 235Right-handed 310
Helix 12
12
A
237 240Right-handed 310
Helix 13
13
A
241 246Right-handed alpha
Helix 14
14
A
253 259Right-handed alpha
Helix 15
15
A
263 278Right-handed alpha
Helix 16
16
B
33 43Right-handed alpha
Helix 17
17
B
45 47Right-handed 310
Helix 18
18
B
59 65Right-handed 310
Helix 19
19
B
70 74Right-handed 310
Helix 20
20
B
75 81Right-handed alpha
Helix 21
21
B
95 105Right-handed alpha
Helix 22
22
B
120 132Right-handed alpha
Helix 23
23
B
134 151Right-handed alpha
Helix 24
24
B
179 188Right-handed alpha
Helix 25
25
B
204 212Right-handed alpha
Helix 26
26
B
220 227Right-handed alpha
Helix 27
27
B
229 235Right-handed 310
Helix 28
28
B
237 240Right-handed 310
Helix 29
29
B
241 247Right-handed alpha
Helix 30
30
B
253 259Right-handed alpha
Helix 31
31
B
263 278Right-handed alpha
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There are 6 sheets in PDB entry 3MD9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
29 32parallel
Strand 3
A
86 90parallel
Strand 4
A
108 112parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
160 165parallel
Strand 3
A
173 175anti-parallel
Strand 4
A
200 202anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
160 165parallel
Strand 3
A
215 219parallel
Strand 4
A
249 252parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
29 32parallel
Strand 3
B
86 90parallel
Strand 4
B
108 112parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
160 167parallel
Strand 3
B
170 175anti-parallel
Strand 4
B
200 202anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
160 167parallel
Strand 3
B
215 219parallel
Strand 4
B
249 252parallel
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