Analysis of interatomic Contacts of Structural Units in PDB entry:
3MDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MDD entry

There are 2 chains in PDB entry 3MDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11LYS 395
B
 GLY 11LYS 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 3MDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
18 37Right-handed alpha
Helix 2
B
A
40 45Right-handed alpha
Helix 3
C
A
50 60Right-handed alpha
Helix 4
D
A
77 89Right-handed alpha
Helix 5
E
A
92 108Right-handed alpha
Helix 6
F
A
114 126Right-handed alpha
Helix 7
G
A
243 279Right-handed alpha
Helix 8
H
A
292 321Right-handed alpha
Helix 9
I
A
325 351Right-handed alpha
Helix 10
J
A
362 373Right-handed alpha
Helix 11
K
A
379 392Right-handed alpha
Helix 12
A
B
18 37Right-handed alpha
Helix 13
B
B
40 45Right-handed alpha
Helix 14
C
B
50 60Right-handed alpha
Helix 15
D
B
77 89Right-handed alpha
Helix 16
E
B
92 108Right-handed alpha
Helix 17
F
B
114 126Right-handed alpha
Helix 18
G
B
243 279Right-handed alpha
Helix 19
H
B
292 321Right-handed alpha
Helix 20
I
B
325 351Right-handed alpha
Helix 21
J
B
362 373Right-handed alpha
Helix 22
K
B
379 392Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3MDD. Click on sheet of interest to get list of strands forming it: 1, 2, 3, 4,

There are 3 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 135first strand
Strand 2
A
175 181parallel
Strand 3
A
194 200anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 154first strand
Strand 2
A
157 165anti-parallel
Strand 3
A
205 212parallel
Strand 4
A
222 233anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 135first strand
Strand 2
B
175 181parallel
Strand 3
B
194 200anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in 4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 154first strand
Strand 2
B
157 165anti-parallel
Strand 3
B
205 212parallel
Strand 4
B
222 233anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il