Analysis of interatomic Contacts of Structural Units in PDB entry:
3MDT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MDT entry

There are 2 chains in PDB entry 3MDT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 59ARG 489
B
 VAL 59ARG 489
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3MDT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 72Right-handed alpha
Helix 2
2
A
89 98Right-handed alpha
Helix 3
3
A
105 113Right-handed alpha
Helix 4
4
A
130 142Right-handed alpha
Helix 5
5
A
143 145Right-handed 310
Helix 6
6
A
146 152Right-handed alpha
Helix 7
7
A
153 170Right-handed alpha
Helix 8
8
A
180 198Right-handed alpha
Helix 9
9
A
202 206Right-handed 310
Helix 10
10
A
208 227Right-handed alpha
Helix 11
11
A
237 267Right-handed alpha
Helix 12
12
A
274 282Right-handed alpha
Helix 13
13
A
289 303Right-handed alpha
Helix 14
14
A
304 318Right-handed alpha
Helix 15
15
A
321 336Right-handed alpha
Helix 16
16
A
343 348Right-handed alpha
Helix 17
17
A
350 364Right-handed alpha
Helix 18
18
A
395 400Right-handed alpha
Helix 19
19
A
412 417Right-handed 310
Helix 20
20
A
432 436Right-handed 310
Helix 21
21
A
439 457Right-handed alpha
Helix 22
22
B
59 72Right-handed alpha
Helix 23
23
B
89 98Right-handed alpha
Helix 24
24
B
109 113Right-handed alpha
Helix 25
25
B
130 142Right-handed alpha
Helix 26
26
B
143 145Right-handed 310
Helix 27
27
B
146 152Right-handed alpha
Helix 28
28
B
153 171Right-handed alpha
Helix 29
29
B
180 198Right-handed alpha
Helix 30
30
B
208 226Right-handed alpha
Helix 31
31
B
236 267Right-handed alpha
Helix 32
32
B
274 283Right-handed alpha
Helix 33
33
B
289 303Right-handed alpha
Helix 34
34
B
304 319Right-handed alpha
Helix 35
35
B
321 336Right-handed alpha
Helix 36
36
B
343 349Right-handed alpha
Helix 37
37
B
350 364Right-handed alpha
Helix 38
38
B
395 400Right-handed alpha
Helix 39
39
B
412 417Right-handed 310
Helix 40
40
B
439 457Right-handed alpha
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There are 10 sheets in PDB entry 3MDT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 79first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
389 394parallel
Strand 4
A
369 374anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
118 119anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
483 488anti-parallel
Strand 3
A
458 462anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
383 385anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 472first strand
Strand 2
A
476 478anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 79first strand
Strand 2
B
82 87anti-parallel
Strand 3
B
389 394parallel
Strand 4
B
369 374anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
118 119anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
483 488anti-parallel
Strand 3
B
458 462anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 380first strand
Strand 2
B
383 385anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
470 472first strand
Strand 2
B
476 478anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il