Analysis of interatomic Contacts of Structural Units in PDB entry:
3ME5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ME5 entry

There is 1 chain in PDB entry 3ME5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 15GLN 466
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3ME5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
29 40Right-handed alpha
Helix 3
3
A
46 55Right-handed alpha
Helix 4
4
A
65 73Right-handed alpha
Helix 5
5
A
97 105Right-handed alpha
Helix 6
6
A
117 128Right-handed alpha
Helix 7
7
A
141 146Right-handed alpha
Helix 8
8
A
153 165Right-handed alpha
Helix 9
9
A
204 217Right-handed alpha
Helix 10
10
A
231 234Right-handed 310
Helix 11
11
A
235 248Right-handed alpha
Helix 12
12
A
269 271Right-handed 310
Helix 13
13
A
287 289Right-handed 310
Helix 14
14
A
295 303Right-handed 310
Helix 15
15
A
310 314Right-handed 310
Helix 16
16
A
319 323Right-handed 310
Helix 17
17
A
325 338Right-handed alpha
Helix 18
18
A
355 360Right-handed 310
Helix 19
19
A
381 388Right-handed alpha
Helix 20
20
A
393 398Right-handed 310
Helix 21
21
A
403 411Right-handed alpha
Helix 22
22
A
426 436Right-handed alpha
Helix 23
23
A
439 465Right-handed alpha
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There are 3 sheets in PDB entry 3ME5. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
108 114parallel
Strand 3
A
87 92parallel
Strand 4
A
170 174parallel
Strand 5
A
220 226parallel
Strand 6
A
277 285anti-parallel
Strand 7
A
250 252anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 138first strand
Strand 2
A
108 114parallel
Strand 3
A
87 92parallel
Strand 4
A
170 174parallel
Strand 5
A
220 226parallel
Strand 6
A
277 285anti-parallel
Strand 7
A
265 267anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 351first strand
Strand 2
A
375 376parallel
Strand 3
A
400 401anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il