Analysis of interatomic Contacts of Structural Units in PDB entry:
3ME6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ME6 entry

There are 4 chains in PDB entry 3ME6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 28HIS 492
B
 GLY 28HIS 492
C
 GLY 28HIS 492
D
 GLY 28HIS 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 3ME6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 46Right-handed 310
Helix 2
2
A
50 63Right-handed alpha
Helix 3
3
A
79 91Right-handed alpha
Helix 4
4
A
104 109Right-handed alpha
Helix 5
5
A
111 116Right-handed alpha
Helix 6
6
A
117 135Right-handed alpha
Helix 7
7
A
136 140Right-handed 310
Helix 8
8
A
141 160Right-handed alpha
Helix 9
9
A
167 184Right-handed alpha
Helix 10
10
A
192 210Right-handed alpha
Helix 11
11
A
212 225Right-handed alpha
Helix 12
12
A
229 255Right-handed alpha
Helix 13
13
A
263 275Right-handed alpha
Helix 14
14
A
284 302Right-handed alpha
Helix 15
15
A
302 317Right-handed alpha
Helix 16
16
A
317 332Right-handed alpha
Helix 17
17
A
339 343Right-handed 310
Helix 18
18
A
346 361Right-handed alpha
Helix 19
19
A
391 397Right-handed alpha
Helix 20
20
A
409 414Right-handed 310
Helix 21
21
A
438 456Right-handed alpha
Helix 22
22
A
464 468Right-handed 310
Helix 23
23
B
42 46Right-handed 310
Helix 24
24
B
50 63Right-handed alpha
Helix 25
25
B
79 89Right-handed alpha
Helix 26
26
B
92 96Right-handed 310
Helix 27
27
B
104 109Right-handed alpha
Helix 28
28
B
111 116Right-handed alpha
Helix 29
29
B
117 135Right-handed alpha
Helix 30
30
B
136 140Right-handed 310
Helix 31
31
B
141 160Right-handed alpha
Helix 32
32
B
167 184Right-handed alpha
Helix 33
33
B
192 210Right-handed alpha
Helix 34
34
B
212 220Right-handed alpha
Helix 35
35
B
220 225Right-handed alpha
Helix 36
36
B
229 255Right-handed alpha
Helix 37
37
B
263 275Right-handed alpha
Helix 38
38
B
284 317Right-handed alpha
Helix 39
39
B
317 332Right-handed alpha
Helix 40
40
B
339 343Right-handed 310
Helix 41
41
B
346 361Right-handed alpha
Helix 42
42
B
392 397Right-handed alpha
Helix 43
43
B
410 414Right-handed 310
Helix 44
44
B
438 456Right-handed alpha
Helix 45
45
C
50 63Right-handed alpha
Helix 46
46
C
79 90Right-handed alpha
Helix 47
47
C
92 96Right-handed 310
Helix 48
48
C
104 109Right-handed alpha
Helix 49
49
C
117 135Right-handed alpha
Helix 50
50
C
141 160Right-handed alpha
Helix 51
51
C
167 183Right-handed alpha
Helix 52
52
C
192 210Right-handed alpha
Helix 53
53
C
211 218Right-handed alpha
Helix 54
54
C
220 225Right-handed alpha
Helix 55
55
C
229 255Right-handed alpha
Helix 56
56
C
263 275Right-handed alpha
Helix 57
57
C
284 302Right-handed alpha
Helix 58
58
C
302 317Right-handed alpha
Helix 59
59
C
317 332Right-handed alpha
Helix 60
60
C
339 343Right-handed 310
Helix 61
61
C
346 361Right-handed alpha
Helix 62
62
C
392 397Right-handed alpha
Helix 63
63
C
409 414Right-handed 310
Helix 64
64
C
438 456Right-handed alpha
Helix 65
65
C
464 468Right-handed 310
Helix 66
66
D
42 46Right-handed 310
Helix 67
67
D
50 63Right-handed alpha
Helix 68
68
D
79 89Right-handed alpha
Helix 69
69
D
92 96Right-handed 310
Helix 70
70
D
104 109Right-handed alpha
Helix 71
71
D
117 134Right-handed alpha
Helix 72
72
D
136 140Right-handed 310
Helix 73
73
D
141 160Right-handed alpha
Helix 74
74
D
167 184Right-handed alpha
Helix 75
75
D
192 210Right-handed alpha
Helix 76
76
D
212 220Right-handed alpha
Helix 77
77
D
220 225Right-handed alpha
Helix 78
78
D
229 256Right-handed alpha
Helix 79
79
D
263 275Right-handed alpha
Helix 80
80
D
284 317Right-handed alpha
Helix 81
81
D
317 332Right-handed alpha
Helix 82
82
D
339 345Right-handed 310
Helix 83
83
D
346 361Right-handed alpha
Helix 84
84
D
391 397Right-handed alpha
Helix 85
85
D
409 414Right-handed 310
Helix 86
86
D
431 435Right-handed 310
Helix 87
87
D
438 456Right-handed alpha
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There are 16 sheets in PDB entry 3ME6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
73 78anti-parallel
Strand 3
A
387 390parallel
Strand 4
A
369 370anti-parallel
Strand 5
A
97 98anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 166first strand
Strand 2
A
485 490anti-parallel
Strand 3
A
457 460anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
381 382anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 475first strand
Strand 2
A
479 480anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 70first strand
Strand 2
B
73 78anti-parallel
Strand 3
B
387 390parallel
Strand 4
B
369 370anti-parallel
Strand 5
B
97 98anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 166first strand
Strand 2
B
485 490anti-parallel
Strand 3
B
457 460anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 377first strand
Strand 2
B
380 382anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 475first strand
Strand 2
B
479 480anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
65 70first strand
Strand 2
C
73 78anti-parallel
Strand 3
C
387 390parallel
Strand 4
C
369 370anti-parallel
Strand 5
C
97 98anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
165 166first strand
Strand 2
C
485 490anti-parallel
Strand 3
C
457 460anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 376first strand
Strand 2
C
381 382anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
474 475first strand
Strand 2
C
479 480anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
65 70first strand
Strand 2
D
73 78anti-parallel
Strand 3
D
387 390parallel
Strand 4
D
369 370anti-parallel
Strand 5
D
97 98anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
164 166first strand
Strand 2
D
485 490anti-parallel
Strand 3
D
457 460anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
375 376first strand
Strand 2
D
381 382anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
474 475first strand
Strand 2
D
479 480anti-parallel
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