Analysis of interatomic Contacts of Structural Units in PDB entry:
3MEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MEB entry

There are 2 chains in PDB entry 3MEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 426
B
 MET 1LYS 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3MEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 25Right-handed alpha
Helix 2
2
A
48 61Right-handed alpha
Helix 3
3
A
75 88Right-handed alpha
Helix 4
4
A
91 96Right-handed alpha
Helix 5
5
A
105 122Right-handed alpha
Helix 6
6
A
135 146Right-handed alpha
Helix 7
7
A
167 178Right-handed alpha
Helix 8
8
A
199 214Right-handed alpha
Helix 9
9
A
230 235Right-handed alpha
Helix 10
10
A
235 244Right-handed alpha
Helix 11
11
A
260 264Right-handed 310
Helix 12
12
A
278 299Right-handed alpha
Helix 13
13
A
305 317Right-handed alpha
Helix 14
14
A
318 350Right-handed alpha
Helix 15
15
A
362 367Right-handed alpha
Helix 16
16
A
377 389Right-handed alpha
Helix 17
17
A
394 396Right-handed 310
Helix 18
18
A
402 404Right-handed 310
Helix 19
19
A
408 423Right-handed alpha
Helix 20
20
B
15 25Right-handed alpha
Helix 21
21
B
48 60Right-handed alpha
Helix 22
22
B
75 88Right-handed alpha
Helix 23
23
B
91 96Right-handed alpha
Helix 24
24
B
105 122Right-handed alpha
Helix 25
25
B
135 146Right-handed alpha
Helix 26
26
B
167 178Right-handed alpha
Helix 27
27
B
199 214Right-handed alpha
Helix 28
28
B
230 235Right-handed alpha
Helix 29
29
B
235 245Right-handed alpha
Helix 30
30
B
260 264Right-handed 310
Helix 31
31
B
278 299Right-handed alpha
Helix 32
32
B
305 317Right-handed alpha
Helix 33
33
B
318 350Right-handed alpha
Helix 34
34
B
362 367Right-handed alpha
Helix 35
35
B
377 389Right-handed alpha
Helix 36
36
B
394 396Right-handed 310
Helix 37
37
B
402 404Right-handed 310
Helix 38
38
B
408 423Right-handed alpha
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There are 6 sheets in PDB entry 3MEB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
390 392parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 104first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
248 253anti-parallel
Strand 4
A
216 221parallel
Strand 5
A
183 187parallel
Strand 6
A
127 130parallel
Strand 7
A
153 155parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 373first strand
Strand 2
A
398 400anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
390 391parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 104first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
248 253anti-parallel
Strand 4
B
216 221parallel
Strand 5
B
183 187parallel
Strand 6
B
127 130parallel
Strand 7
B
153 155parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
371 373first strand
Strand 2
B
398 400anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il