Analysis of interatomic Contacts of Structural Units in PDB entry:
3MEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MEP entry

There are 3 chains in PDB entry 3MEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 12PRO 190
B
 ASN 13PRO 190
C
 ASN 13THR 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 3MEP

There are 7 sheets in PDB entry 3MEP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
53 59anti-parallel
Strand 3
A
164 171anti-parallel
Strand 4
A
79 87anti-parallel
Strand 5
A
90 98anti-parallel
Strand 6
A
103 111anti-parallel
Strand 7
A
114 120anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 24first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
179 188anti-parallel
Strand 4
A
63 71anti-parallel
Strand 5
A
128 135anti-parallel
Strand 6
A
138 144anti-parallel
Strand 7
A
152 157anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
48 50anti-parallel
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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 16first strand
Strand 2
B
53 59anti-parallel
Strand 3
B
164 171anti-parallel
Strand 4
B
79 87anti-parallel
Strand 5
B
90 98anti-parallel
Strand 6
B
103 111anti-parallel
Strand 7
B
114 120anti-parallel
Strand 8
C
152 157anti-parallel
Strand 9
C
138 144anti-parallel
Strand 10
C
128 135anti-parallel
Strand 11
C
63 71anti-parallel
Strand 12
C
179 188anti-parallel
Strand 13
C
28 32anti-parallel
Strand 14
C
21 24anti-parallel
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There are 14 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 24first strand
Strand 2
B
28 32anti-parallel
Strand 3
B
179 188anti-parallel
Strand 4
B
63 71anti-parallel
Strand 5
B
128 135anti-parallel
Strand 6
B
138 144anti-parallel
Strand 7
B
152 157anti-parallel
Strand 8
C
114 117anti-parallel
Strand 9
C
103 111anti-parallel
Strand 10
C
90 98anti-parallel
Strand 11
C
79 87anti-parallel
Strand 12
C
164 171anti-parallel
Strand 13
C
53 59anti-parallel
Strand 14
C
14 16anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
48 50anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
48 50anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il