Analysis of interatomic Contacts of Structural Units in PDB entry:
3MES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MES entry

There are 2 chains in PDB entry 3MES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 50ASN 423
B
 ASP 50ASN 423
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 3MES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 62Right-handed alpha
Helix 2
2
A
69 71Right-handed 310
Helix 3
3
A
119 133Right-handed alpha
Helix 4
4
A
159 163Right-handed 310
Helix 5
5
A
164 180Right-handed alpha
Helix 6
6
A
180 185Right-handed alpha
Helix 7
7
A
197 215Right-handed alpha
Helix 8
8
A
221 241Right-handed alpha
Helix 9
9
A
246 255Right-handed alpha
Helix 10
10
A
256 260Right-handed 310
Helix 11
11
A
270 272Right-handed 310
Helix 12
12
A
294 304Right-handed alpha
Helix 13
13
A
321 324Right-handed 310
Helix 14
14
A
326 343Right-handed alpha
Helix 15
15
A
350 363Right-handed alpha
Helix 16
16
A
363 377Right-handed alpha
Helix 17
17
A
390 412Right-handed alpha
Helix 18
18
A
416 420Right-handed 310
Helix 19
19
B
50 62Right-handed alpha
Helix 20
20
B
69 71Right-handed 310
Helix 21
21
B
119 133Right-handed alpha
Helix 22
22
B
160 163Right-handed 310
Helix 23
23
B
164 180Right-handed alpha
Helix 24
24
B
181 183Right-handed 310
Helix 25
25
B
197 215Right-handed alpha
Helix 26
26
B
221 232Right-handed alpha
Helix 27
27
B
234 240Right-handed alpha
Helix 28
28
B
246 255Right-handed alpha
Helix 29
29
B
257 260Right-handed 310
Helix 30
30
B
270 272Right-handed 310
Helix 31
31
B
294 304Right-handed alpha
Helix 32
32
B
321 324Right-handed 310
Helix 33
33
B
326 343Right-handed alpha
Helix 34
34
B
350 363Right-handed alpha
Helix 35
35
B
363 377Right-handed alpha
Helix 36
36
B
390 412Right-handed alpha
Helix 37
37
B
416 420Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 3MES. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
85 91anti-parallel
Strand 3
A
104 109anti-parallel
Strand 4
A
146 150anti-parallel
Strand 5
A
139 143anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
274 276anti-parallel
Strand 3
A
281 283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 265first strand
Strand 2
A
290 293anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
318 319anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 78first strand
Strand 2
B
85 91anti-parallel
Strand 3
B
104 109anti-parallel
Strand 4
B
146 150anti-parallel
Strand 5
B
139 143anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
274 276anti-parallel
Strand 3
B
281 283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 265first strand
Strand 2
B
290 293anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
318 319anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il