Analysis of interatomic Contacts of Structural Units in PDB entry:
3MEV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MEV entry

There are 4 chains in PDB entry 3MEV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 114LYS 288
B
 GLY 114LYS 291
C
 ALA 1THR 3
D
 ALA 1THR 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 3MEV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
114 130Right-handed alpha
Helix 2
2
A
223 227Right-handed 310
Helix 3
3
A
280 282Right-handed 310
Helix 4
4
B
114 130Right-handed alpha
Helix 5
5
B
223 227Right-handed 310
Helix 6
6
B
280 282Right-handed 310
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There are 4 sheets in PDB entry 3MEV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
189 194anti-parallel
Strand 3
A
173 184anti-parallel
Strand 4
A
243 251anti-parallel
Strand 5
A
260 264anti-parallel
Strand 6
A
277 279anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
173 184anti-parallel
Strand 4
A
243 251anti-parallel
Strand 5
A
233 237anti-parallel
Strand 6
A
284 286anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 206first strand
Strand 2
B
189 194anti-parallel
Strand 3
B
173 184anti-parallel
Strand 4
B
243 251anti-parallel
Strand 5
B
260 264anti-parallel
Strand 6
B
277 279anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
173 184anti-parallel
Strand 4
B
243 251anti-parallel
Strand 5
B
233 237anti-parallel
Strand 6
B
284 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il