Analysis of interatomic Contacts of Structural Units in PDB entry:
3MFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MFK entry

There are 4 chains in PDB entry 3MFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 302ALA 439
B
 GLY 302PRO 437
C
 G 1 T 16
D
 C 101 G 116
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3MFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
303 313Right-handed alpha
Helix 2
2
A
322 331Right-handed alpha
Helix 3
3
A
336 346Right-handed alpha
Helix 4
4
A
347 353Right-handed 310
Helix 5
5
A
367 379Right-handed alpha
Helix 6
6
A
385 395Right-handed alpha
Helix 7
7
A
395 400Right-handed alpha
Helix 8
8
A
417 423Right-handed alpha
Helix 9
9
A
425 433Right-handed alpha
Helix 10
10
B
303 313Right-handed alpha
Helix 11
11
B
322 331Right-handed alpha
Helix 12
12
B
336 345Right-handed alpha
Helix 13
13
B
367 379Right-handed alpha
Helix 14
14
B
385 395Right-handed alpha
Helix 15
15
B
417 423Right-handed alpha
Helix 16
16
B
425 434Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3MFK. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
362 364anti-parallel
Strand 3
A
411 413anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 356first strand
Strand 2
B
362 364anti-parallel
Strand 3
B
411 414anti-parallel
Strand 4
B
402 404anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il