Analysis of interatomic Contacts of Structural Units in PDB entry:
3MFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MFQ entry

There are 3 chains in PDB entry 3MFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 32LYS 309
B
 SER 32LYS 309
C
 SER 32LYS 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 3MFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 52Right-handed alpha
Helix 2
2
A
73 83Right-handed alpha
Helix 3
3
A
97 105Right-handed alpha
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
131 134Right-handed 310
Helix 6
6
A
135 151Right-handed alpha
Helix 7
7
A
154 156Right-handed 310
Helix 8
8
A
157 184Right-handed alpha
Helix 9
9
A
185 186Right-handed 310
Helix 10
10
A
187 190Right-handed 310
Helix 11
11
A
200 207Right-handed alpha
Helix 12
12
A
224 239Right-handed alpha
Helix 13
13
A
251 263Right-handed alpha
Helix 14
14
A
292 309Right-handed alpha
Helix 15
15
B
40 52Right-handed alpha
Helix 16
16
B
73 83Right-handed alpha
Helix 17
17
B
97 105Right-handed alpha
Helix 18
18
B
113 117Right-handed 310
Helix 19
19
B
131 134Right-handed 310
Helix 20
20
B
135 154Right-handed alpha
Helix 21
21
B
157 184Right-handed alpha
Helix 22
22
B
200 207Right-handed alpha
Helix 23
23
B
224 238Right-handed alpha
Helix 24
24
B
251 264Right-handed alpha
Helix 25
25
B
292 309Right-handed alpha
Helix 26
26
C
40 52Right-handed alpha
Helix 27
27
C
73 83Right-handed alpha
Helix 28
28
C
97 105Right-handed alpha
Helix 29
29
C
113 117Right-handed 310
Helix 30
30
C
131 134Right-handed 310
Helix 31
31
C
135 154Right-handed alpha
Helix 32
32
C
157 184Right-handed alpha
Helix 33
33
C
185 186Right-handed 310
Helix 34
34
C
187 190Right-handed 310
Helix 35
35
C
200 207Right-handed alpha
Helix 36
36
C
224 239Right-handed alpha
Helix 37
37
C
251 265Right-handed alpha
Helix 38
38
C
292 309Right-handed alpha
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There are 12 sheets in PDB entry 3MFQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
35 38parallel
Strand 3
A
85 88parallel
Strand 4
A
106 107parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
127 128anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
210 212parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
269 271parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
35 38parallel
Strand 3
B
85 88parallel
Strand 4
B
106 107parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
127 128anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
210 212parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 244first strand
Strand 2
B
269 271parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 59first strand
Strand 2
C
35 38parallel
Strand 3
C
85 88parallel
Strand 4
C
106 107parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 120first strand
Strand 2
C
127 128anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
192 194first strand
Strand 2
C
210 212parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
242 244first strand
Strand 2
C
269 271parallel
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