Analysis of interatomic Contacts of Structural Units in PDB entry:
3MGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MGB entry

There are 2 chains in PDB entry 3MGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -31GLY 285
B
 MET 1GLY 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3MGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
33 39Right-handed alpha
Helix 3
3
A
44 49Right-handed alpha
Helix 4
4
A
74 79Right-handed 310
Helix 5
5
A
91 103Right-handed alpha
Helix 6
6
A
109 124Right-handed alpha
Helix 7
7
A
132 136Right-handed 310
Helix 8
8
A
141 151Right-handed alpha
Helix 9
9
A
152 157Right-handed alpha
Helix 10
10
A
167 173Right-handed alpha
Helix 11
11
A
173 186Right-handed alpha
Helix 12
12
A
192 202Right-handed alpha
Helix 13
13
A
204 215Right-handed alpha
Helix 14
14
A
235 239Right-handed 310
Helix 15
15
A
253 256Right-handed 310
Helix 16
16
A
257 269Right-handed alpha
Helix 17
17
A
272 281Right-handed alpha
Helix 18
18
B
14 28Right-handed alpha
Helix 19
19
B
33 39Right-handed alpha
Helix 20
20
B
44 49Right-handed alpha
Helix 21
21
B
72 77Right-handed alpha
Helix 22
22
B
91 103Right-handed alpha
Helix 23
23
B
109 124Right-handed alpha
Helix 24
24
B
141 151Right-handed alpha
Helix 25
25
B
152 157Right-handed alpha
Helix 26
26
B
167 173Right-handed alpha
Helix 27
27
B
173 186Right-handed alpha
Helix 28
28
B
192 202Right-handed alpha
Helix 29
29
B
204 219Right-handed alpha
Helix 30
30
B
253 256Right-handed 310
Helix 31
31
B
257 270Right-handed alpha
Helix 32
32
B
272 281Right-handed alpha
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There are 3 sheets in PDB entry 3MGB. Click on sheet of interest to get list of strands forming it: AA, AB, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-27 -26first strand
Strand 2
D
391 392anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
61 66parallel
Strand 3
A
3 9parallel
Strand 4
A
82 89parallel
Strand 5
A
161 166parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
61 66parallel
Strand 3
B
3 9parallel
Strand 4
B
82 89parallel
Strand 5
B
161 166parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il