Analysis of interatomic Contacts of Structural Units in PDB entry:
3MGK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MGK entry

There are 2 chains in PDB entry 3MGK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2TYR 200
B
 SER 0TYR 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3MGK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 26Right-handed alpha
Helix 2
2
A
73 79Right-handed alpha
Helix 3
3
A
81 95Right-handed alpha
Helix 4
4
A
103 111Right-handed alpha
Helix 5
5
A
125 131Right-handed alpha
Helix 6
6
A
155 172Right-handed alpha
Helix 7
7
A
172 184Right-handed alpha
Helix 8
8
A
194 198Right-handed 310
Helix 9
9
B
14 26Right-handed alpha
Helix 10
10
B
74 79Right-handed alpha
Helix 11
11
B
81 94Right-handed alpha
Helix 12
12
B
103 111Right-handed alpha
Helix 13
13
B
125 131Right-handed alpha
Helix 14
14
B
155 172Right-handed alpha
Helix 15
15
B
172 184Right-handed alpha
Helix 16
16
B
194 198Right-handed 310
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There are 6 sheets in PDB entry 3MGK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 37first strand
Strand 2
A
3 8parallel
Strand 3
A
64 69parallel
Strand 4
A
97 100parallel
Strand 5
A
150 153parallel
Strand 6
A
144 147anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 45first strand
Strand 2
A
51 54anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
137 138parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 37first strand
Strand 2
B
3 8parallel
Strand 3
B
64 69parallel
Strand 4
B
97 100parallel
Strand 5
B
150 153parallel
Strand 6
B
144 147anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
51 54anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
137 138parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il