Analysis of interatomic Contacts of Structural Units in PDB entry:
3MIZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MIZ entry

There are 2 chains in PDB entry 3MIZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 58PHE 338
B
 SER 59GLY 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3MIZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 89Right-handed alpha
Helix 2
2
A
101 115Right-handed alpha
Helix 3
3
A
160 174Right-handed alpha
Helix 4
4
A
189 207Right-handed alpha
Helix 5
5
A
209 211Right-handed 310
Helix 6
6
A
229 239Right-handed alpha
Helix 7
7
A
251 264Right-handed alpha
Helix 8
8
A
268 273Right-handed alpha
Helix 9
9
A
281 286Right-handed alpha
Helix 10
10
A
298 315Right-handed alpha
Helix 11
11
B
75 89Right-handed alpha
Helix 12
12
B
101 115Right-handed alpha
Helix 13
13
B
160 175Right-handed alpha
Helix 14
14
B
189 206Right-handed alpha
Helix 15
15
B
209 211Right-handed 310
Helix 16
16
B
229 240Right-handed alpha
Helix 17
17
B
251 265Right-handed alpha
Helix 18
18
B
281 286Right-handed alpha
Helix 19
19
B
298 316Right-handed alpha
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There are 7 sheets in PDB entry 3MIZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 97first strand
Strand 2
A
61 66parallel
Strand 3
A
119 129parallel
Strand 4
A
141 147parallel
Strand 5
A
156 159parallel
Strand 6
A
323 326parallel
Strand 7
B
323 326anti-parallel
Strand 8
B
156 159parallel
Strand 9
B
141 147parallel
Strand 10
B
119 129parallel
Strand 11
B
61 66parallel
Strand 12
B
92 97parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 217first strand
Strand 2
A
180 184parallel
Strand 3
A
246 249parallel
Strand 4
A
274 276parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
227 228anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
329 331anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 217first strand
Strand 2
B
180 184parallel
Strand 3
B
246 249parallel
Strand 4
B
274 276parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
227 228anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
294 296first strand
Strand 2
B
329 331anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il