Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MJ7 entry

There are 2 chains in PDB entry 3MJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11GLN 239
B
 ILE 3VAL 210
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3MJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
65 68Right-handed 310
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
193 197Right-handed 310
Helix 4
4
A
207 211Right-handed 310
Helix 5
5
B
65 69Right-handed 310
Helix 6
6
B
78 82Right-handed 310
Helix 7
7
B
92 95Right-handed 310
Helix 8
8
B
166 173Right-handed 310
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There are 8 sheets in PDB entry 3MJ7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 16first strand
Strand 2
A
108 119parallel
Strand 3
B
48 56anti-parallel
Strand 4
B
35 42anti-parallel
Strand 5
B
97 105anti-parallel
Strand 6
B
108 119anti-parallel
Strand 7
B
8 13parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
51 57anti-parallel
Strand 3
A
35 43anti-parallel
Strand 4
A
95 103anti-parallel
Strand 5
A
108 119anti-parallel
Strand 6
B
48 56anti-parallel
Strand 7
B
59 61anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
84 86anti-parallel
Strand 3
A
21 23anti-parallel
Strand 4
A
141 142parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
223 234parallel
Strand 3
A
212 220anti-parallel
Strand 4
A
150 156anti-parallel
Strand 5
A
164 170anti-parallel
Strand 6
A
178 179anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
201 203anti-parallel
Strand 3
A
188 190anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 20first strand
Strand 2
B
86 88anti-parallel
Strand 3
B
72 74anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
141 144anti-parallel
Strand 3
B
177 178anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 157first strand
Strand 2
B
192 196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il