Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MJC entry

There are 2 chains in PDB entry 3MJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2SER 473
B
 SER -2SER 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 3MJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 2Right-handed 310
Helix 2
2
A
29 33Right-handed 310
Helix 3
3
A
35 46Right-handed alpha
Helix 4
4
A
58 73Right-handed alpha
Helix 5
5
A
83 86Right-handed 310
Helix 6
6
A
98 114Right-handed alpha
Helix 7
7
A
137 154Right-handed alpha
Helix 8
8
A
169 182Right-handed alpha
Helix 9
9
A
228 241Right-handed alpha
Helix 10
10
A
252 256Right-handed 310
Helix 11
11
A
258 269Right-handed alpha
Helix 12
12
A
282 292Right-handed alpha
Helix 13
13
A
319 329Right-handed alpha
Helix 14
14
A
330 342Right-handed alpha
Helix 15
15
A
355 359Right-handed alpha
Helix 16
16
A
364 384Right-handed alpha
Helix 17
17
A
405 414Right-handed alpha
Helix 18
18
A
420 435Right-handed alpha
Helix 19
19
A
445 454Right-handed alpha
Helix 20
20
A
459 464Right-handed 310
Helix 21
21
A
465 473Right-handed alpha
Helix 22
22
B
-2 3Right-handed alpha
Helix 23
23
B
29 33Right-handed 310
Helix 24
24
B
35 46Right-handed alpha
Helix 25
25
B
58 73Right-handed alpha
Helix 26
26
B
83 86Right-handed 310
Helix 27
27
B
98 114Right-handed alpha
Helix 28
28
B
137 154Right-handed alpha
Helix 29
29
B
169 182Right-handed alpha
Helix 30
30
B
228 242Right-handed alpha
Helix 31
31
B
252 256Right-handed 310
Helix 32
32
B
258 269Right-handed alpha
Helix 33
33
B
282 292Right-handed alpha
Helix 34
34
B
319 329Right-handed alpha
Helix 35
35
B
330 342Right-handed alpha
Helix 36
36
B
355 359Right-handed alpha
Helix 37
37
B
364 384Right-handed alpha
Helix 38
38
B
405 414Right-handed alpha
Helix 39
39
B
420 435Right-handed alpha
Helix 40
40
B
445 454Right-handed alpha
Helix 41
41
B
459 464Right-handed 310
Helix 42
42
B
465 473Right-handed alpha
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There are 6 sheets in PDB entry 3MJC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 14 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
78 81parallel
Strand 3
A
119 124parallel
Strand 4
A
158 164parallel
Strand 5
A
188 192parallel
Strand 6
A
195 203anti-parallel
Strand 7
A
4 11anti-parallel
Strand 8
A
438 441anti-parallel
Strand 9
A
389 393parallel
Strand 10
A
348 354parallel
Strand 11
A
299 304parallel
Strand 12
A
220 224parallel
Strand 13
A
245 249parallel
Strand 14
A
272 276parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
93 97anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
416 419parallel
Strand 3
A
443 444anti-parallel
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There are 14 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
78 81parallel
Strand 3
B
119 124parallel
Strand 4
B
158 164parallel
Strand 5
B
188 192parallel
Strand 6
B
195 203anti-parallel
Strand 7
B
4 11anti-parallel
Strand 8
B
438 441anti-parallel
Strand 9
B
389 393parallel
Strand 10
B
348 354parallel
Strand 11
B
299 304parallel
Strand 12
B
220 224parallel
Strand 13
B
245 249parallel
Strand 14
B
272 276parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
93 97anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 396first strand
Strand 2
B
416 419parallel
Strand 3
B
443 444anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il