Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MJF entry

There is 1 chain in PDB entry 3MJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0LYS 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3MJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
34 40Right-handed alpha
Helix 3
3
A
52 63Right-handed alpha
Helix 4
4
A
72 78Right-handed alpha
Helix 5
5
A
79 87Right-handed alpha
Helix 6
6
A
95 104Right-handed alpha
Helix 7
7
A
104 115Right-handed alpha
Helix 8
8
A
127 139Right-handed alpha
Helix 9
9
A
160 173Right-handed alpha
Helix 10
10
A
174 179Right-handed alpha
Helix 11
11
A
240 251Right-handed alpha
Helix 12
12
A
251 262Right-handed alpha
Helix 13
13
A
289 292Right-handed 310
Helix 14
14
A
295 303Right-handed alpha
Helix 15
15
A
306 316Right-handed alpha
Helix 16
16
A
318 322Right-handed 310
Helix 17
17
A
393 406Right-handed alpha
Helix 18
18
A
420 425Right-handed alpha
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There are 7 sheets in PDB entry 3MJF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
25 32parallel
Strand 3
A
1 7parallel
Strand 4
A
65 70parallel
Strand 5
A
91 92parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
184 188anti-parallel
Strand 3
A
142 146anti-parallel
Strand 4
A
155 158anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
193 202anti-parallel
Strand 3
A
267 276anti-parallel
Strand 4
A
282 287anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
331 338anti-parallel
Strand 4
A
383 390anti-parallel
Strand 5
A
362 366anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 214first strand
Strand 2
A
231 234anti-parallel
Strand 3
A
331 338anti-parallel
Strand 4
A
413 414anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 219first strand
Strand 2
A
223 226anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
377 379anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il