Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MJH entry

There are 4 chains in PDB entry 3MJH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 16LYS 183
B
 SER 36ASP 69
C
 LYS 17LYS 183
D
 SER 37ASP 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3MJH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 43Right-handed alpha
Helix 2
2
A
79 84Right-handed 310
Helix 3
3
A
85 91Right-handed alpha
Helix 4
4
A
104 122Right-handed alpha
Helix 5
5
A
134 141Right-handed 310
Helix 6
6
A
144 154Right-handed alpha
Helix 7
7
A
169 181Right-handed alpha
Helix 8
8
B
52 64Right-handed alpha
Helix 9
9
C
32 43Right-handed alpha
Helix 10
10
C
79 84Right-handed 310
Helix 11
11
C
85 91Right-handed alpha
Helix 12
12
C
104 121Right-handed alpha
Helix 13
13
C
137 141Right-handed 310
Helix 14
14
C
144 155Right-handed alpha
Helix 15
15
C
169 181Right-handed alpha
Helix 16
16
D
52 64Right-handed alpha
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There are 2 sheets in PDB entry 3MJH. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
127 133parallel
Strand 3
A
95 101parallel
Strand 4
A
17 26parallel
Strand 5
A
67 76parallel
Strand 6
A
55 64anti-parallel
Strand 7
B
39 42anti-parallel
Strand 8
B
49 50anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
158 161first strand
Strand 2
C
127 133parallel
Strand 3
C
95 101parallel
Strand 4
C
18 26parallel
Strand 5
C
68 76parallel
Strand 6
C
55 63anti-parallel
Strand 7
D
39 42anti-parallel
Strand 8
D
49 50anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il