Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3MJI entry

There are 4 chains in PDB entry 3MJI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 334
B	MET 1	VAL 334
C	MET 1	GLN 333
D	MET 1	GLN 333

There are 36 helices in PDB entry 3MJI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	104	106	Right-handed 310
Helix 2	2	A	107	116	Right-handed alpha
Helix 3	3	A	118	127	Right-handed alpha
Helix 4	4	A	181	189	Right-handed alpha
Helix 5	5	A	190	193	Right-handed 310
Helix 6	6	A	216	220	Right-handed 310
Helix 7	7	A	227	242	Right-handed alpha
Helix 8	8	A	247	261	Right-handed alpha
Helix 9	9	A	308	310	Right-handed 310
Helix 10	10	B	104	106	Right-handed 310
Helix 11	11	B	107	116	Right-handed alpha
Helix 12	12	B	118	127	Right-handed alpha
Helix 13	13	B	181	190	Right-handed alpha
Helix 14	14	B	191	193	Right-handed 310
Helix 15	15	B	216	220	Right-handed 310
Helix 16	16	B	227	242	Right-handed alpha
Helix 17	17	B	247	261	Right-handed alpha
Helix 18	18	B	308	310	Right-handed 310
Helix 19	19	C	104	106	Right-handed 310
Helix 20	20	C	107	116	Right-handed alpha
Helix 21	21	C	118	127	Right-handed alpha
Helix 22	22	C	181	189	Right-handed alpha
Helix 23	23	C	190	193	Right-handed 310
Helix 24	24	C	216	220	Right-handed 310
Helix 25	25	C	227	242	Right-handed alpha
Helix 26	26	C	247	259	Right-handed alpha
Helix 27	27	C	260	263	Right-handed 310
Helix 28	28	D	104	106	Right-handed 310
Helix 29	29	D	107	116	Right-handed alpha
Helix 30	30	D	118	127	Right-handed alpha
Helix 31	31	D	181	189	Right-handed alpha
Helix 32	32	D	190	193	Right-handed 310
Helix 33	33	D	216	220	Right-handed 310
Helix 34	34	D	227	242	Right-handed alpha
Helix 35	35	D	247	259	Right-handed alpha
Helix 36	36	D	260	263	Right-handed 310

There are 22 sheets in PDB entry 3MJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	6	10	anti-parallel
Strand 3	A	16	24	anti-parallel
Strand 4	A	278	286	anti-parallel
Strand 5	A	291	296	anti-parallel
Strand 6	A	299	306	anti-parallel
Strand 7	D	329	330	parallel

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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	169	first strand
Strand 2	A	156	162	anti-parallel
Strand 3	A	145	150	anti-parallel
Strand 4	A	80	85	anti-parallel
Strand 5	A	69	75	anti-parallel
Strand 6	A	57	62	anti-parallel
Strand 7	A	31	35	anti-parallel
Strand 8	A	318	321	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	50	51	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	129	131	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	205	first strand
Strand 2	A	208	210	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	330	first strand
Strand 2	D	299	306	parallel
Strand 3	D	291	296	anti-parallel
Strand 4	D	278	286	anti-parallel
Strand 5	D	16	24	anti-parallel
Strand 6	D	6	10	anti-parallel
Strand 7	D	175	176	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	176	first strand
Strand 2	B	6	10	anti-parallel
Strand 3	B	16	24	anti-parallel
Strand 4	B	278	286	anti-parallel
Strand 5	B	291	296	anti-parallel
Strand 6	B	299	306	anti-parallel
Strand 7	C	329	330	parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	72	75	anti-parallel
Strand 4	B	80	85	anti-parallel
Strand 5	B	145	150	anti-parallel
Strand 6	B	156	162	anti-parallel
Strand 7	B	165	169	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	70	first strand
Strand 2	B	57	62	anti-parallel
Strand 3	B	31	35	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	50	51	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	103	first strand
Strand 2	B	129	131	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	210	anti-parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	330	first strand
Strand 2	C	303	306	parallel
Strand 3	C	291	296	anti-parallel
Strand 4	C	278	286	anti-parallel
Strand 5	C	16	24	anti-parallel
Strand 6	C	6	10	anti-parallel
Strand 7	C	175	176	anti-parallel

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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	57	62	anti-parallel
Strand 3	C	72	75	anti-parallel
Strand 4	C	80	85	anti-parallel
Strand 5	C	145	150	anti-parallel
Strand 6	C	156	162	anti-parallel
Strand 7	C	165	170	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	70	first strand
Strand 2	C	57	62	anti-parallel
Strand 3	C	31	35	anti-parallel
Strand 4	C	318	321	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	50	51	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	C	129	131	parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	205	first strand
Strand 2	C	208	210	anti-parallel

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There are 8 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	169	first strand
Strand 2	D	156	162	anti-parallel
Strand 3	D	145	150	anti-parallel
Strand 4	D	80	85	anti-parallel
Strand 5	D	69	75	anti-parallel
Strand 6	D	57	62	anti-parallel
Strand 7	D	31	35	anti-parallel
Strand 8	D	318	321	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	44	first strand
Strand 2	D	47	51	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	103	first strand
Strand 2	D	129	131	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	205	first strand
Strand 2	D	208	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3MJI

Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJI