Analysis of interatomic Contacts of Structural Units in PDB entry:
3MJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MJS entry

There are 2 chains in PDB entry 3MJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2SER 473
B
 SER -2LEU 472
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 3MJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 2Right-handed 310
Helix 2
2
A
35 46Right-handed alpha
Helix 3
3
A
58 74Right-handed alpha
Helix 4
4
A
83 86Right-handed 310
Helix 5
5
A
98 114Right-handed alpha
Helix 6
6
A
137 154Right-handed alpha
Helix 7
7
A
169 182Right-handed alpha
Helix 8
8
A
228 241Right-handed alpha
Helix 9
9
A
252 256Right-handed 310
Helix 10
10
A
258 269Right-handed alpha
Helix 11
11
A
282 292Right-handed alpha
Helix 12
12
A
319 328Right-handed alpha
Helix 13
13
A
330 342Right-handed alpha
Helix 14
14
A
343 345Right-handed 310
Helix 15
15
A
355 359Right-handed alpha
Helix 16
16
A
364 384Right-handed alpha
Helix 17
17
A
404 414Right-handed alpha
Helix 18
18
A
420 435Right-handed alpha
Helix 19
19
A
445 454Right-handed alpha
Helix 20
20
A
459 464Right-handed 310
Helix 21
21
A
465 473Right-handed alpha
Helix 22
22
B
0 2Right-handed 310
Helix 23
23
B
35 46Right-handed alpha
Helix 24
24
B
58 74Right-handed alpha
Helix 25
25
B
83 86Right-handed 310
Helix 26
26
B
98 114Right-handed alpha
Helix 27
27
B
137 154Right-handed alpha
Helix 28
28
B
169 182Right-handed alpha
Helix 29
29
B
228 241Right-handed alpha
Helix 30
30
B
252 256Right-handed 310
Helix 31
31
B
258 269Right-handed alpha
Helix 32
32
B
282 292Right-handed alpha
Helix 33
33
B
319 328Right-handed alpha
Helix 34
34
B
330 342Right-handed alpha
Helix 35
35
B
343 345Right-handed 310
Helix 36
36
B
355 359Right-handed alpha
Helix 37
37
B
364 384Right-handed alpha
Helix 38
38
B
400 403Right-handed 310
Helix 39
39
B
404 414Right-handed alpha
Helix 40
40
B
420 435Right-handed alpha
Helix 41
41
B
445 454Right-handed alpha
Helix 42
42
B
459 464Right-handed 310
Helix 43
43
B
465 472Right-handed alpha
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There are 6 sheets in PDB entry 3MJS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 15 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
24 28parallel
Strand 3
A
78 81parallel
Strand 4
A
119 124parallel
Strand 5
A
158 164parallel
Strand 6
A
188 192parallel
Strand 7
A
195 203anti-parallel
Strand 8
A
4 11anti-parallel
Strand 9
A
438 441anti-parallel
Strand 10
A
389 393parallel
Strand 11
A
348 354parallel
Strand 12
A
299 304parallel
Strand 13
A
220 224parallel
Strand 14
A
245 250parallel
Strand 15
A
272 277parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
93 97anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 396first strand
Strand 2
A
416 419parallel
Strand 3
A
443 444anti-parallel
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There are 15 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
24 28parallel
Strand 3
B
78 81parallel
Strand 4
B
119 124parallel
Strand 5
B
158 164parallel
Strand 6
B
188 192parallel
Strand 7
B
195 203anti-parallel
Strand 8
B
4 12anti-parallel
Strand 9
B
438 441anti-parallel
Strand 10
B
389 393parallel
Strand 11
B
348 354parallel
Strand 12
B
299 304parallel
Strand 13
B
220 224parallel
Strand 14
B
245 250parallel
Strand 15
B
272 277parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
93 97anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 396first strand
Strand 2
B
416 419parallel
Strand 3
B
443 444anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il