Analysis of interatomic Contacts of Structural Units in PDB entry:
3MK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MK8 entry

There are 4 chains in PDB entry 3MK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 172HIS 320
B
 ALA 5VAL 16
B
 ARG 18HIS 20
B
 THR 22ALA 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 3MK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
172 189Right-handed alpha
Helix 2
2
A
204 224Right-handed alpha
Helix 3
3
A
226 236Right-handed alpha
Helix 4
4
A
239 244Right-handed alpha
Helix 5
5
A
244 254Right-handed alpha
Helix 6
6
A
255 257Right-handed 310
Helix 7
7
A
260 280Right-handed alpha
Helix 8
8
A
283 285Right-handed 310
Helix 9
9
A
286 301Right-handed alpha
Helix 10
10
A
302 309Right-handed alpha
Helix 11
11
A
310 319Right-handed alpha
Helix 12
12
B
7 22Right-handed alpha
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There are no sheets in PDB entry 3MK8
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il