Analysis of interatomic Contacts of Structural Units in PDB entry:
3MKC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MKC entry

There is 1 chain in PDB entry 3MKC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3MKC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 60Right-handed alpha
Helix 2
2
A
82 94Right-handed alpha
Helix 3
3
A
94 99Right-handed alpha
Helix 4
4
A
101 123Right-handed alpha
Helix 5
5
A
125 130Right-handed alpha
Helix 6
6
A
153 171Right-handed alpha
Helix 7
7
A
187 203Right-handed alpha
Helix 8
8
A
218 229Right-handed alpha
Helix 9
9
A
230 233Right-handed 310
Helix 10
10
A
245 256Right-handed alpha
Helix 11
11
A
267 278Right-handed alpha
Helix 12
12
A
292 307Right-handed alpha
Helix 13
13
A
318 332Right-handed alpha
Helix 14
14
A
342 346Right-handed 310
Helix 15
15
A
348 354Right-handed alpha
Helix 16
16
A
379 385Right-handed alpha
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There are 5 sheets in PDB entry 3MKC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
29 38anti-parallel
Strand 3
A
43 48anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
366 367anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 238first strand
Strand 2
A
207 211parallel
Strand 3
A
175 179parallel
Strand 4
A
141 143parallel
Strand 5
A
339 340parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
283 284parallel
Strand 3
A
310 311parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
377 378anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il