Analysis of interatomic Contacts of Structural Units in PDB entry:
3MKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MKJ entry

There are 5 chains in PDB entry 3MKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASP 3
A
 ARG 5GLY 114
A
 THR 116TYR 192
A
 GLN 194GLY 244
A
 MET 246PHE 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3MKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 7Right-handed 310
Helix 2
2
A
8 16Right-handed alpha
Helix 3
3
A
41 49Right-handed alpha
Helix 4
4
A
63 78Right-handed alpha
Helix 5
5
A
87 100Right-handed alpha
Helix 6
6
A
113 122Right-handed alpha
Helix 7
7
A
122 127Right-handed alpha
Helix 8
8
A
138 146Right-handed alpha
Helix 9
9
A
167 178Right-handed alpha
Helix 10
10
A
189 194Right-handed alpha
Helix 11
11
A
195 200Right-handed 310
Helix 12
12
A
226 236Right-handed alpha
Helix 13
13
A
236 241Right-handed alpha
Helix 14
14
A
247 259Right-handed alpha
Helix 15
15
A
260 281Right-handed alpha
Helix 16
16
A
298 306Right-handed alpha
Helix 17
17
A
319 329Right-handed alpha
Helix 18
18
A
359 365Right-handed alpha
Helix 19
19
A
381 397Right-handed alpha
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There are 2 sheets in PDB entry 3MKJ. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
203 207anti-parallel
Strand 4
A
181 185parallel
Strand 5
A
150 156parallel
Strand 6
A
105 109parallel
Strand 7
A
130 134parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 289first strand
Strand 2
A
312 317anti-parallel
Strand 3
A
372 376anti-parallel
Strand 4
A
346 348anti-parallel
Strand 5
A
335 336parallel
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