Analysis of interatomic Contacts of Structural Units in PDB entry:
3ML0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ML0 entry

There are 2 chains in PDB entry 3ML0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1ALA 195
B
 SER 1PRO 551
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3ML0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 37Right-handed alpha
Helix 2
2
A
38 50Right-handed alpha
Helix 3
3
A
52 57Right-handed alpha
Helix 4
4
A
62 75Right-handed alpha
Helix 5
5
A
76 86Right-handed alpha
Helix 6
6
A
88 112Right-handed alpha
Helix 7
7
A
113 116Right-handed 310
Helix 8
8
A
117 124Right-handed alpha
Helix 9
9
A
131 143Right-handed alpha
Helix 10
10
A
153 167Right-handed alpha
Helix 11
11
A
167 180Right-handed alpha
Helix 12
12
B
146 156Right-handed alpha
Helix 13
13
B
157 159Right-handed 310
Helix 14
14
B
162 171Right-handed alpha
Helix 15
15
B
222 226Right-handed 310
Helix 16
16
B
262 267Right-handed alpha
Helix 17
17
B
276 282Right-handed alpha
Helix 18
18
B
282 290Right-handed alpha
Helix 19
19
B
298 306Right-handed alpha
Helix 20
20
B
320 324Right-handed 310
Helix 21
21
B
338 354Right-handed alpha
Helix 22
22
B
354 359Right-handed alpha
Helix 23
23
B
364 369Right-handed alpha
Helix 24
24
B
386 397Right-handed alpha
Helix 25
25
B
414 432Right-handed alpha
Helix 26
26
B
516 522Right-handed alpha
Helix 27
27
B
531 536Right-handed alpha
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There are 8 sheets in PDB entry 3ML0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
177 183anti-parallel
Strand 3
B
188 191anti-parallel
Strand 4
B
228 230anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 69first strand
Strand 2
B
177 183anti-parallel
Strand 3
B
63 65anti-parallel
Strand 4
B
57 59anti-parallel
Strand 5
B
42 49anti-parallel
Strand 6
B
32 39anti-parallel
Strand 7
A
15 18parallel
Strand 8
A
3 10anti-parallel
Strand 9
B
539 547anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
236 240first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
16 21anti-parallel
Strand 4
B
479 484anti-parallel
Strand 5
B
490 494anti-parallel
Strand 6
B
526 528anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
89 91anti-parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
135 141anti-parallel
Strand 5
B
126 130anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 98first strand
Strand 2
B
89 91anti-parallel
Strand 3
B
75 82anti-parallel
Strand 4
B
209 211parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 106first strand
Strand 2
B
114 120anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
197 198first strand
Strand 2
B
219 220anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 450first strand
Strand 2
B
467 470anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il