Analysis of interatomic Contacts of Structural Units in PDB entry:
3ML3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ML3 entry

There is 1 chain in PDB entry 3ML3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 585ASP 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There is 1 helix in PDB entry 3ML3. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
627 631Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 3ML3. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
614 616parallel
Strand 3
A
641 652parallel
Strand 4
A
669 680parallel
Strand 5
A
699 700parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 595first strand
Strand 2
A
621 623parallel
Strand 3
A
641 652parallel
Strand 4
A
669 680parallel
Strand 5
A
705 707parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
608 611first strand
Strand 2
A
634 638parallel
Strand 3
A
663 666parallel
Strand 4
A
692 696parallel
Strand 5
A
732 739anti-parallel
Strand 6
A
716 722anti-parallel
Strand 7
A
711 713anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il