Analysis of interatomic Contacts of Structural Units in PDB entry:
3MLE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MLE entry

There are 6 chains in PDB entry 3MLE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1GLY 219
B
 PHE -3SER 220
C
 PHE -3GLY 219
D
 PHE -3GLY 219
E
 GLY -1GLY 219
F
 PHE -3GLY 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3MLE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 27Right-handed alpha
Helix 2
2
A
49 59Right-handed alpha
Helix 3
3
A
66 71Right-handed alpha
Helix 4
4
A
80 89Right-handed alpha
Helix 5
5
A
95 108Right-handed alpha
Helix 6
6
A
130 138Right-handed alpha
Helix 7
7
A
151 165Right-handed alpha
Helix 8
8
A
182 187Right-handed alpha
Helix 9
9
A
187 197Right-handed alpha
Helix 10
10
A
208 218Right-handed alpha
Helix 11
11
B
12 27Right-handed alpha
Helix 12
12
B
49 59Right-handed alpha
Helix 13
13
B
66 71Right-handed alpha
Helix 14
14
B
80 89Right-handed alpha
Helix 15
15
B
95 108Right-handed alpha
Helix 16
16
B
130 138Right-handed alpha
Helix 17
17
B
151 165Right-handed alpha
Helix 18
18
B
181 187Right-handed alpha
Helix 19
19
B
187 197Right-handed alpha
Helix 20
20
B
208 218Right-handed alpha
Helix 21
21
C
12 27Right-handed alpha
Helix 22
22
C
49 59Right-handed alpha
Helix 23
23
C
66 71Right-handed alpha
Helix 24
24
C
80 89Right-handed alpha
Helix 25
25
C
95 108Right-handed alpha
Helix 26
26
C
130 138Right-handed alpha
Helix 27
27
C
151 165Right-handed alpha
Helix 28
28
C
181 187Right-handed alpha
Helix 29
29
C
187 197Right-handed alpha
Helix 30
30
C
208 218Right-handed alpha
Helix 31
31
D
12 27Right-handed alpha
Helix 32
32
D
49 59Right-handed alpha
Helix 33
33
D
66 71Right-handed alpha
Helix 34
34
D
80 89Right-handed alpha
Helix 35
35
D
95 108Right-handed alpha
Helix 36
36
D
130 138Right-handed alpha
Helix 37
37
D
151 165Right-handed alpha
Helix 38
38
D
182 187Right-handed alpha
Helix 39
39
D
187 198Right-handed alpha
Helix 40
40
D
208 218Right-handed alpha
Helix 41
41
E
12 27Right-handed alpha
Helix 42
42
E
49 59Right-handed alpha
Helix 43
43
E
66 71Right-handed alpha
Helix 44
44
E
80 89Right-handed alpha
Helix 45
45
E
95 108Right-handed alpha
Helix 46
46
E
130 138Right-handed alpha
Helix 47
47
E
151 165Right-handed alpha
Helix 48
48
E
182 187Right-handed alpha
Helix 49
49
E
187 197Right-handed alpha
Helix 50
50
E
208 218Right-handed alpha
Helix 51
51
F
12 27Right-handed alpha
Helix 52
52
F
49 59Right-handed alpha
Helix 53
53
F
66 71Right-handed alpha
Helix 54
54
F
80 89Right-handed alpha
Helix 55
55
F
95 108Right-handed alpha
Helix 56
56
F
130 138Right-handed alpha
Helix 57
57
F
151 165Right-handed alpha
Helix 58
58
F
182 187Right-handed alpha
Helix 59
59
F
187 197Right-handed alpha
Helix 60
60
F
208 218Right-handed alpha
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There are 12 sheets in PDB entry 3MLE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
112 120parallel
Strand 3
A
0 6parallel
Strand 4
A
141 146parallel
Strand 5
A
170 174parallel
Strand 6
A
203 204parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
73 75parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 34first strand
Strand 2
B
112 120parallel
Strand 3
B
0 6parallel
Strand 4
B
141 146parallel
Strand 5
B
170 174parallel
Strand 6
B
203 204parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
73 74parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 34first strand
Strand 2
C
112 120parallel
Strand 3
C
0 6parallel
Strand 4
C
141 146parallel
Strand 5
C
170 174parallel
Strand 6
C
203 204parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
37 38first strand
Strand 2
C
73 74parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 34first strand
Strand 2
D
112 120parallel
Strand 3
D
0 6parallel
Strand 4
D
141 146parallel
Strand 5
D
170 174parallel
Strand 6
D
203 204parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 39first strand
Strand 2
D
73 75parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
31 34first strand
Strand 2
E
112 116parallel
Strand 3
E
0 6parallel
Strand 4
E
141 146parallel
Strand 5
E
170 174parallel
Strand 6
E
203 204parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 39first strand
Strand 2
E
73 75parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
31 34first strand
Strand 2
F
112 120parallel
Strand 3
F
0 6parallel
Strand 4
F
141 146parallel
Strand 5
F
170 174parallel
Strand 6
F
203 204parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
37 39first strand
Strand 2
F
73 75parallel
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