Analysis of interatomic Contacts of Structural Units in PDB entry:
3MLO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MLO entry

There are 4 chains in PDB entry 3MLO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 35PHE 246
B
 GLY 35GLN 247
C
 C 1 G 22
D
 C 1 G 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 3MLO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 45Right-handed alpha
Helix 2
2
A
94 102Right-handed 310
Helix 3
3
A
147 151Right-handed 310
Helix 4
4
A
161 166Right-handed alpha
Helix 5
5
A
170 176Right-handed alpha
Helix 6
6
B
94 102Right-handed 310
Helix 7
7
B
147 151Right-handed 310
Helix 8
8
B
170 176Right-handed alpha
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There are 8 sheets in PDB entry 3MLO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
121 132parallel
Strand 3
A
108 115anti-parallel
Strand 4
A
81 92anti-parallel
Strand 5
A
67 75anti-parallel
Strand 6
A
51 56anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
225 235parallel
Strand 3
A
211 216anti-parallel
Strand 4
A
121 132anti-parallel
Strand 5
A
108 115anti-parallel
Strand 6
A
81 92anti-parallel
Strand 7
A
67 75anti-parallel
Strand 8
A
187 194anti-parallel
Strand 9
A
181 183anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 56first strand
Strand 2
A
67 75anti-parallel
Strand 3
A
187 194anti-parallel
Strand 4
A
154 155anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
121 132parallel
Strand 3
B
108 115anti-parallel
Strand 4
B
89 92anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
108 115anti-parallel
Strand 3
B
121 132anti-parallel
Strand 4
B
211 216anti-parallel
Strand 5
B
227 228anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 56first strand
Strand 2
B
67 76anti-parallel
Strand 3
B
187 194anti-parallel
Strand 4
B
154 155anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 56first strand
Strand 2
B
67 76anti-parallel
Strand 3
B
187 194anti-parallel
Strand 4
B
181 183anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
233 235parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il