Analysis of interatomic Contacts of Structural Units in PDB entry:
3MLV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MLV entry

There are 6 chains in PDB entry 3MLV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
TYR 2THR 213
H
GLU 1SER 215
P
ARG 304TYR 318
M
SER 1THR 213
N
GLU 1SER 215
Q
ARG 304TYR 318
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3MLV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
L
79 83Right-handed 310
Helix 2
2
L
125 131Right-handed alpha
Helix 3
3
L
185 192Right-handed alpha
Helix 4
4
H
28 32Right-handed 310
Helix 5
5
H
73 75Right-handed 310
Helix 6
6
H
83 87Right-handed 310
Helix 7
7
H
156 158Right-handed 310
Helix 8
8
H
201 204Right-handed 310
Helix 9
9
M
27 31Right-handed 310
Helix 10
10
M
79 83Right-handed 310
Helix 11
11
M
125 131Right-handed alpha
Helix 12
12
M
185 192Right-handed alpha
Helix 13
13
N
28 32Right-handed 310
Helix 14
14
N
73 75Right-handed 310
Helix 15
15
N
83 87Right-handed 310
Helix 16
16
N
156 158Right-handed 310
Helix 17
17
N
185 192Right-handed alpha
Helix 18
18
N
201 204Right-handed 310
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There are 26 sheets in PDB entry 3MLV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
9 13first strand
Strand 2
L
106 109parallel
Strand 3
L
84 95anti-parallel
Strand 4
L
34 38anti-parallel
Strand 5
L
45 48anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
9 13first strand
Strand 2
L
106 109parallel
Strand 3
L
84 95anti-parallel
Strand 4
L
96 102anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
19 24first strand
Strand 2
L
70 75anti-parallel
Strand 3
L
62 67anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
118 122first strand
Strand 2
L
134 143anti-parallel
Strand 3
L
176 184anti-parallel
Strand 4
L
163 165anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
118 122first strand
Strand 2
L
134 143anti-parallel
Strand 3
L
176 184anti-parallel
Strand 4
L
169 170anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
157 159first strand
Strand 2
L
149 154anti-parallel
Strand 3
L
195 201anti-parallel
Strand 4
L
204 210anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
68 72anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 98anti-parallel
Strand 4
H
33 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
107 111parallel
Strand 3
H
88 98anti-parallel
Strand 4
H
100 103anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 127first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
163 165anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
120 127first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
176 185anti-parallel
Strand 4
H
169 170anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
151 154first strand
Strand 2
H
194 200anti-parallel
Strand 3
H
205 211anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
307 312first strand
Strand 2
P
315 317anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
4 5first strand
Strand 2
M
19 25anti-parallel
Strand 3
M
70 75anti-parallel
Strand 4
M
62 67anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
9 13first strand
Strand 2
M
106 109parallel
Strand 3
M
84 94anti-parallel
Strand 4
M
34 38anti-parallel
Strand 5
M
45 48anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
9 13first strand
Strand 2
M
106 109parallel
Strand 3
M
84 94anti-parallel
Strand 4
M
97 102anti-parallel
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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
118 122first strand
Strand 2
M
135 143anti-parallel
Strand 3
M
176 183anti-parallel
Strand 4
M
163 165anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
118 122first strand
Strand 2
M
135 143anti-parallel
Strand 3
M
176 183anti-parallel
Strand 4
M
169 170anti-parallel
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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
157 158first strand
Strand 2
M
149 154anti-parallel
Strand 3
M
195 201anti-parallel
Strand 4
M
204 210anti-parallel
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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
3 6first strand
Strand 2
N
18 25anti-parallel
Strand 3
N
77 82anti-parallel
Strand 4
N
68 72anti-parallel
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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
10 12first strand
Strand 2
N
107 111parallel
Strand 3
N
88 98anti-parallel
Strand 4
N
33 39anti-parallel
Strand 5
N
45 51anti-parallel
Strand 6
N
57 59anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
10 12first strand
Strand 2
N
107 111parallel
Strand 3
N
88 98anti-parallel
Strand 4
N
100 103anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
120 127first strand
Strand 2
N
136 145anti-parallel
Strand 3
N
176 184anti-parallel
Strand 4
N
163 165anti-parallel
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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
120 127first strand
Strand 2
N
136 145anti-parallel
Strand 3
N
176 184anti-parallel
Strand 4
N
169 170anti-parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
151 154first strand
Strand 2
N
194 200anti-parallel
Strand 3
N
205 211anti-parallel
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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
307 312first strand
Strand 2
Q
315 317anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il