Analysis of interatomic Contacts of Structural Units in PDB entry:
3MMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MMB entry

There are 4 chains in PDB entry 3MMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1TRP 417
B
 GLU 4TRP 366
D
 SER 1TRP 417
E
 GLU 4TRP 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 3MMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 8Right-handed alpha
Helix 2
2
A
9 11Right-handed 310
Helix 3
3
A
16 34Right-handed alpha
Helix 4
4
A
42 58Right-handed alpha
Helix 5
5
A
88 92Right-handed 310
Helix 6
6
A
102 104Right-handed 310
Helix 7
7
A
109 123Right-handed alpha
Helix 8
8
A
142 144Right-handed 310
Helix 9
9
A
145 156Right-handed alpha
Helix 10
10
A
176 180Right-handed 310
Helix 11
11
A
187 199Right-handed alpha
Helix 12
12
A
199 205Right-handed alpha
Helix 13
13
A
225 230Right-handed alpha
Helix 14
14
A
245 254Right-handed alpha
Helix 15
15
A
257 262Right-handed alpha
Helix 16
16
A
289 295Right-handed alpha
Helix 17
17
A
337 355Right-handed alpha
Helix 18
18
A
360 369Right-handed alpha
Helix 19
19
A
369 377Right-handed alpha
Helix 20
20
A
382 386Right-handed 310
Helix 21
21
A
405 413Right-handed alpha
Helix 22
22
B
14 19Right-handed 310
Helix 23
23
B
20 27Right-handed alpha
Helix 24
24
B
64 78Right-handed alpha
Helix 25
25
B
96 98Right-handed 310
Helix 26
26
B
99 111Right-handed alpha
Helix 27
27
B
135 139Right-handed 310
Helix 28
28
B
146 164Right-handed alpha
Helix 29
29
B
203 211Right-handed alpha
Helix 30
30
B
212 219Right-handed alpha
Helix 31
31
B
229 232Right-handed 310
Helix 32
32
B
245 251Right-handed alpha
Helix 33
33
B
296 314Right-handed alpha
Helix 34
34
B
319 337Right-handed alpha
Helix 35
35
B
341 345Right-handed 310
Helix 36
36
B
352 357Right-handed 310
Helix 37
37
D
3 9Right-handed alpha
Helix 38
38
D
17 35Right-handed alpha
Helix 39
39
D
44 58Right-handed alpha
Helix 40
40
D
88 92Right-handed 310
Helix 41
41
D
109 123Right-handed alpha
Helix 42
42
D
145 154Right-handed alpha
Helix 43
43
D
176 180Right-handed 310
Helix 44
44
D
187 199Right-handed alpha
Helix 45
45
D
199 205Right-handed alpha
Helix 46
46
D
225 230Right-handed alpha
Helix 47
47
D
245 256Right-handed alpha
Helix 48
48
D
257 262Right-handed alpha
Helix 49
49
D
263 266Right-handed 310
Helix 50
50
D
289 294Right-handed alpha
Helix 51
51
D
337 355Right-handed alpha
Helix 52
52
D
360 369Right-handed alpha
Helix 53
53
D
369 378Right-handed alpha
Helix 54
54
D
382 386Right-handed 310
Helix 55
55
D
398 402Right-handed 310
Helix 56
56
D
405 414Right-handed alpha
Helix 57
57
E
14 19Right-handed 310
Helix 58
58
E
20 26Right-handed alpha
Helix 59
59
E
64 78Right-handed alpha
Helix 60
60
E
96 98Right-handed 310
Helix 61
61
E
99 111Right-handed alpha
Helix 62
62
E
135 139Right-handed 310
Helix 63
63
E
146 158Right-handed alpha
Helix 64
64
E
158 163Right-handed alpha
Helix 65
65
E
183 187Right-handed 310
Helix 66
66
E
203 211Right-handed alpha
Helix 67
67
E
212 218Right-handed alpha
Helix 68
68
E
245 251Right-handed alpha
Helix 69
69
E
296 314Right-handed alpha
Helix 70
70
E
319 336Right-handed alpha
Helix 71
71
E
341 345Right-handed 310
Helix 72
72
E
352 358Right-handed 310
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There are 17 sheets in PDB entry 3MMB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
81 82anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
96 99anti-parallel
Strand 3
A
136 139anti-parallel
Strand 4
A
126 128anti-parallel
Strand 5
B
61 63anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 108first strand
Strand 2
B
81 84anti-parallel
Strand 3
B
90 94anti-parallel
Strand 4
B
50 56anti-parallel
Strand 5
B
40 45anti-parallel
Strand 6
B
30 37anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
214 217parallel
Strand 3
A
232 238parallel
Strand 4
A
305 311anti-parallel
Strand 5
A
325 331anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
299 300anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
278 280anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
119 120first strand
Strand 2
B
125 126anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 176first strand
Strand 2
B
190 195parallel
Strand 3
B
263 268anti-parallel
Strand 4
B
283 290anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 228first strand
Strand 2
B
233 236anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 63first strand
Strand 2
D
81 82anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 78first strand
Strand 2
D
95 99anti-parallel
Strand 3
D
136 141anti-parallel
Strand 4
D
126 128anti-parallel
Strand 5
E
61 63anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 108first strand
Strand 2
E
81 84anti-parallel
Strand 3
E
90 94anti-parallel
Strand 4
E
50 54anti-parallel
Strand 5
E
40 44anti-parallel
Strand 6
E
33 37anti-parallel
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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
173 174first strand
Strand 2
D
214 217parallel
Strand 3
D
232 238parallel
Strand 4
D
305 311anti-parallel
Strand 5
D
325 331anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
243 244first strand
Strand 2
D
299 300anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
271 273first strand
Strand 2
D
278 280anti-parallel
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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
173 176first strand
Strand 2
E
190 195parallel
Strand 3
E
263 268anti-parallel
Strand 4
E
283 290anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
225 226first strand
Strand 2
E
235 236anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il