Analysis of interatomic Contacts of Structural Units in PDB entry:
3MMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3MMP entry

There are 4 chains in PDB entry 3MMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	SER 1393
G	SER 7	ALA 573
C	ILE 3	SER 1393
F	SER 7	ALA 573

There are 98 helices in PDB entry 3MMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	16	Right-handed alpha
Helix 2	2	A	18	26	Right-handed alpha
Helix 3	3	A	32	52	Right-handed alpha
Helix 4	4	A	79	85	Right-handed alpha
Helix 5	5	A	85	102	Right-handed alpha
Helix 6	6	A	106	126	Right-handed alpha
Helix 7	7	A	161	176	Right-handed alpha
Helix 8	8	A	181	185	Right-handed 310
Helix 9	9	A	192	202	Right-handed alpha
Helix 10	10	A	207	226	Right-handed alpha
Helix 11	11	A	227	230	Right-handed 310
Helix 12	12	A	241	248	Right-handed alpha
Helix 13	13	A	270	282	Right-handed alpha
Helix 14	14	A	1023	1040	Right-handed alpha
Helix 15	15	A	1083	1093	Right-handed alpha
Helix 16	16	A	1114	1125	Right-handed alpha
Helix 17	17	A	1136	1140	Right-handed 310
Helix 18	18	A	1142	1160	Right-handed alpha
Helix 19	19	A	1163	1167	Right-handed 310
Helix 20	20	A	1173	1180	Right-handed alpha
Helix 21	21	A	1181	1199	Right-handed alpha
Helix 22	22	A	1204	1208	Right-handed 310
Helix 23	23	A	1282	1286	Right-handed 310
Helix 24	24	G	10	20	Right-handed alpha
Helix 25	25	G	28	41	Right-handed alpha
Helix 26	26	G	48	54	Right-handed alpha
Helix 27	27	G	62	76	Right-handed alpha
Helix 28	28	G	87	111	Right-handed alpha
Helix 29	29	G	122	140	Right-handed alpha
Helix 30	30	G	144	152	Right-handed alpha
Helix 31	31	G	163	167	Right-handed 310
Helix 32	32	G	168	175	Right-handed alpha
Helix 33	33	G	180	182	Right-handed 310
Helix 34	34	G	183	193	Right-handed alpha
Helix 35	35	G	226	245	Right-handed alpha
Helix 36	36	G	246	248	Right-handed 310
Helix 37	37	G	254	268	Right-handed alpha
Helix 38	38	G	277	281	Right-handed 310
Helix 39	39	G	283	291	Right-handed alpha
Helix 40	40	G	292	303	Right-handed alpha
Helix 41	41	G	327	348	Right-handed alpha
Helix 42	42	G	350	354	Right-handed 310
Helix 43	43	G	367	378	Right-handed alpha
Helix 44	44	G	383	387	Right-handed 310
Helix 45	45	G	418	433	Right-handed alpha
Helix 46	46	G	440	452	Right-handed alpha
Helix 47	47	G	455	461	Right-handed alpha
Helix 48	48	G	475	479	Right-handed 310
Helix 49	49	G	504	518	Right-handed alpha
Helix 50	50	G	535	543	Right-handed alpha
Helix 51	51	C	4	16	Right-handed alpha
Helix 52	52	C	18	26	Right-handed alpha
Helix 53	53	C	32	52	Right-handed alpha
Helix 54	54	C	79	85	Right-handed alpha
Helix 55	55	C	85	102	Right-handed alpha
Helix 56	56	C	106	126	Right-handed alpha
Helix 57	57	C	161	176	Right-handed alpha
Helix 58	58	C	181	185	Right-handed 310
Helix 59	59	C	192	202	Right-handed alpha
Helix 60	60	C	207	226	Right-handed alpha
Helix 61	61	C	241	248	Right-handed alpha
Helix 62	62	C	270	282	Right-handed alpha
Helix 63	63	C	1023	1040	Right-handed alpha
Helix 64	64	C	1083	1093	Right-handed alpha
Helix 65	65	C	1114	1125	Right-handed alpha
Helix 66	66	C	1136	1140	Right-handed 310
Helix 67	67	C	1142	1160	Right-handed alpha
Helix 68	68	C	1163	1167	Right-handed 310
Helix 69	69	C	1173	1180	Right-handed alpha
Helix 70	70	C	1181	1199	Right-handed alpha
Helix 71	71	C	1204	1208	Right-handed 310
Helix 72	72	C	1282	1286	Right-handed 310
Helix 73	73	F	10	20	Right-handed alpha
Helix 74	74	F	28	41	Right-handed alpha
Helix 75	75	F	48	54	Right-handed alpha
Helix 76	76	F	62	75	Right-handed alpha
Helix 77	77	F	87	111	Right-handed alpha
Helix 78	78	F	122	140	Right-handed alpha
Helix 79	79	F	144	152	Right-handed alpha
Helix 80	80	F	163	167	Right-handed 310
Helix 81	81	F	168	175	Right-handed alpha
Helix 82	82	F	183	193	Right-handed alpha
Helix 83	83	F	226	245	Right-handed alpha
Helix 84	84	F	246	248	Right-handed 310
Helix 85	85	F	254	268	Right-handed alpha
Helix 86	86	F	277	281	Right-handed 310
Helix 87	87	F	283	291	Right-handed alpha
Helix 88	88	F	292	303	Right-handed alpha
Helix 89	89	F	327	348	Right-handed alpha
Helix 90	90	F	350	354	Right-handed 310
Helix 91	91	F	367	378	Right-handed alpha
Helix 92	92	F	383	387	Right-handed 310
Helix 93	93	F	418	433	Right-handed alpha
Helix 94	94	F	440	452	Right-handed alpha
Helix 95	95	F	455	461	Right-handed alpha
Helix 96	96	F	475	479	Right-handed 310
Helix 97	97	F	504	518	Right-handed alpha
Helix 98	98	F	535	543	Right-handed alpha

There are 30 sheets in PDB entry 3MMP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	66	first strand
Strand 2	A	69	77	anti-parallel
Strand 3	A	130	138	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	147	first strand
Strand 2	A	151	158	anti-parallel
Strand 3	A	251	259	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	233	first strand
Strand 2	A	236	240	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1067	1070	first strand
Strand 2	A	1075	1080	anti-parallel
Strand 3	A	1011	1018	parallel
Strand 4	A	1100	1106	parallel
Strand 5	A	1130	1135	parallel
Strand 6	A	1169	1171	parallel

Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1211	1213	first strand
Strand 2	A	1291	1293	anti-parallel
Strand 3	A	1241	1245	anti-parallel
Strand 4	A	1251	1259	anti-parallel
Strand 5	A	1273	1278	anti-parallel
Strand 6	A	1224	1230	anti-parallel
Strand 7	A	1216	1220	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1211	1213	first strand
Strand 2	A	1291	1293	anti-parallel
Strand 3	A	1241	1245	anti-parallel
Strand 4	A	1251	1259	anti-parallel
Strand 5	A	1264	1265	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1235	1237	first strand
Strand 2	A	1267	1269	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1300	1310	first strand
Strand 2	A	1355	1367	anti-parallel
Strand 3	A	1335	1342	anti-parallel
Strand 4	A	1329	1332	anti-parallel
Strand 5	A	1373	1378	anti-parallel
Strand 6	A	1381	1391	anti-parallel
Strand 7	A	1300	1310	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	177	179	first strand
Strand 2	G	200	203	parallel

Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	220	224	first strand
Strand 2	G	206	212	anti-parallel
Strand 3	G	306	308	parallel
Strand 4	G	314	316	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	270	274	first strand
Strand 2	G	360	364	anti-parallel
Strand 3	G	355	357	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	393	396	first strand
Strand 2	G	399	402	anti-parallel
Strand 3	G	405	406	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	434	435	first strand
Strand 2	G	438	439	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	462	463	first strand
Strand 2	G	472	473	parallel

Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	483	485	first strand
Strand 2	G	488	501	anti-parallel
Strand 3	G	553	567	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	66	first strand
Strand 2	C	69	77	anti-parallel
Strand 3	C	130	138	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	141	147	first strand
Strand 2	C	151	158	anti-parallel
Strand 3	C	251	259	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	232	233	first strand
Strand 2	C	236	240	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1070	first strand
Strand 2	C	1075	1080	anti-parallel
Strand 3	C	1011	1018	parallel
Strand 4	C	1100	1106	parallel
Strand 5	C	1130	1135	parallel
Strand 6	C	1169	1171	parallel

Back to list of sheets
Back to top of page

There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1211	1213	first strand
Strand 2	C	1291	1293	anti-parallel
Strand 3	C	1241	1245	anti-parallel
Strand 4	C	1251	1259	anti-parallel
Strand 5	C	1273	1278	anti-parallel
Strand 6	C	1224	1230	anti-parallel
Strand 7	C	1216	1220	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1211	1213	first strand
Strand 2	C	1291	1293	anti-parallel
Strand 3	C	1241	1245	anti-parallel
Strand 4	C	1251	1259	anti-parallel
Strand 5	C	1264	1265	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1235	1237	first strand
Strand 2	C	1267	1269	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1300	1310	first strand
Strand 2	C	1355	1367	anti-parallel
Strand 3	C	1335	1342	anti-parallel
Strand 4	C	1329	1332	anti-parallel
Strand 5	C	1373	1378	anti-parallel
Strand 6	C	1381	1391	anti-parallel
Strand 7	C	1300	1310	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	177	179	first strand
Strand 2	F	200	203	parallel

Back to list of sheets
Back to top of page

There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	224	first strand
Strand 2	F	206	212	anti-parallel
Strand 3	F	306	308	parallel
Strand 4	F	314	316	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	270	274	first strand
Strand 2	F	360	364	anti-parallel
Strand 3	F	355	357	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	393	396	first strand
Strand 2	F	399	402	anti-parallel
Strand 3	F	405	406	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	434	435	first strand
Strand 2	F	438	439	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	462	463	first strand
Strand 2	F	472	473	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	483	485	first strand
Strand 2	F	488	501	anti-parallel
Strand 3	F	553	567	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3MMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
3MMP