Analysis of interatomic Contacts of Structural Units in PDB entry:
3MMZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MMZ entry

There are 4 chains in PDB entry 3MMZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASP 164
B
 SER 2ASP 164
C
 LEU 3ASP 164
D
 SER 2HIS 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3MMZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 12Right-handed 310
Helix 2
2
A
42 54Right-handed alpha
Helix 3
3
A
66 77Right-handed alpha
Helix 4
4
A
86 99Right-handed alpha
Helix 5
5
A
101 103Right-handed 310
Helix 6
6
A
111 113Right-handed 310
Helix 7
7
A
114 121Right-handed alpha
Helix 8
8
A
131 138Right-handed alpha
Helix 9
9
A
149 160Right-handed alpha
Helix 10
10
B
8 12Right-handed 310
Helix 11
11
B
42 54Right-handed alpha
Helix 12
12
B
67 77Right-handed alpha
Helix 13
13
B
86 99Right-handed alpha
Helix 14
14
B
101 103Right-handed 310
Helix 15
15
B
111 113Right-handed 310
Helix 16
16
B
114 121Right-handed alpha
Helix 17
17
B
131 138Right-handed alpha
Helix 18
18
B
149 160Right-handed alpha
Helix 19
19
C
41 54Right-handed alpha
Helix 20
20
C
68 77Right-handed alpha
Helix 21
21
C
86 99Right-handed alpha
Helix 22
22
C
101 103Right-handed 310
Helix 23
23
C
111 113Right-handed 310
Helix 24
24
C
114 121Right-handed alpha
Helix 25
25
C
131 138Right-handed alpha
Helix 26
26
C
149 160Right-handed alpha
Helix 27
27
D
41 54Right-handed alpha
Helix 28
28
D
67 77Right-handed alpha
Helix 29
29
D
86 99Right-handed alpha
Helix 30
30
D
101 103Right-handed 310
Helix 31
31
D
111 113Right-handed 310
Helix 32
32
D
114 121Right-handed alpha
Helix 33
33
D
131 138Right-handed alpha
Helix 34
34
D
149 160Right-handed alpha
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There are 6 sheets in PDB entry 3MMZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
57 62parallel
Strand 3
A
14 17parallel
Strand 4
A
105 109parallel
Strand 5
A
123 126parallel
Strand 6
A
140 141parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
36 41anti-parallel
Strand 3
C
27 30anti-parallel
Strand 4
C
36 37anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 82first strand
Strand 2
B
57 62parallel
Strand 3
B
14 17parallel
Strand 4
B
105 109parallel
Strand 5
B
123 126parallel
Strand 6
B
140 141parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 30first strand
Strand 2
B
36 41anti-parallel
Strand 3
D
27 31anti-parallel
Strand 4
D
36 37anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 81first strand
Strand 2
C
57 61parallel
Strand 3
C
14 17parallel
Strand 4
C
105 109parallel
Strand 5
C
123 126parallel
Strand 6
C
140 141parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
80 82first strand
Strand 2
D
57 62parallel
Strand 3
D
14 17parallel
Strand 4
D
105 109parallel
Strand 5
D
123 126parallel
Strand 6
D
140 141parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il