Analysis of interatomic Contacts of Structural Units in PDB entry:
3MPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MPG entry

There are 2 chains in PDB entry 3MPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 426
B
 MET 1ALA 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3MPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
72 84Right-handed alpha
Helix 2
2
A
100 115Right-handed alpha
Helix 3
3
A
126 130Right-handed 310
Helix 4
4
A
136 143Right-handed alpha
Helix 5
5
A
157 171Right-handed alpha
Helix 6
6
A
181 185Right-handed 310
Helix 7
7
A
193 199Right-handed alpha
Helix 8
8
A
206 224Right-handed alpha
Helix 9
9
A
234 247Right-handed alpha
Helix 10
10
A
256 262Right-handed alpha
Helix 11
11
A
263 267Right-handed 310
Helix 12
12
A
271 275Right-handed 310
Helix 13
13
A
282 296Right-handed alpha
Helix 14
14
A
311 315Right-handed 310
Helix 15
15
A
329 338Right-handed alpha
Helix 16
16
A
345 352Right-handed alpha
Helix 17
17
A
354 362Right-handed alpha
Helix 18
18
A
388 392Right-handed 310
Helix 19
19
B
72 83Right-handed alpha
Helix 20
20
B
100 114Right-handed alpha
Helix 21
21
B
126 130Right-handed 310
Helix 22
22
B
136 143Right-handed alpha
Helix 23
23
B
157 171Right-handed alpha
Helix 24
24
B
181 185Right-handed 310
Helix 25
25
B
193 199Right-handed alpha
Helix 26
26
B
206 224Right-handed alpha
Helix 27
27
B
234 247Right-handed alpha
Helix 28
28
B
256 262Right-handed alpha
Helix 29
29
B
263 267Right-handed 310
Helix 30
30
B
271 275Right-handed 310
Helix 31
31
B
282 296Right-handed alpha
Helix 32
32
B
309 315Right-handed alpha
Helix 33
33
B
329 338Right-handed alpha
Helix 34
34
B
345 352Right-handed alpha
Helix 35
35
B
354 361Right-handed alpha
Helix 36
36
B
388 392Right-handed 310
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There are 14 sheets in PDB entry 3MPG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
17 25anti-parallel
Strand 3
A
2 11anti-parallel
Strand 4
A
42 45parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
376 380anti-parallel
Strand 3
A
409 415anti-parallel
Strand 4
A
418 422anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 60first strand
Strand 2
A
85 90parallel
Strand 3
A
118 121parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
148 149parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 177first strand
Strand 2
A
227 229parallel
Strand 3
A
251 253parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 191first strand
Strand 2
A
203 204parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
385 386first strand
Strand 2
A
405 406anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 33first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
2 11anti-parallel
Strand 4
B
42 45parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
376 380anti-parallel
Strand 3
B
409 415anti-parallel
Strand 4
B
418 422anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 60first strand
Strand 2
B
85 90parallel
Strand 3
B
118 121parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
148 149parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 177first strand
Strand 2
B
226 229parallel
Strand 3
B
251 255parallel
Strand 4
B
300 301parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 191first strand
Strand 2
B
203 204parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
385 386first strand
Strand 2
B
405 406anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il