Analysis of interatomic Contacts of Structural Units in PDB entry:
3MPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MPK entry

There is 1 chain in PDB entry 3MPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 292ARG 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 3MPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
296 306Right-handed alpha
Helix 2
2
A
331 345Right-handed alpha
Helix 3
3
A
355 366Right-handed alpha
Helix 4
4
A
377 381Right-handed 310
Helix 5
5
A
408 412Right-handed 310
Helix 6
6
A
424 433Right-handed alpha
Helix 7
7
A
443 453Right-handed alpha
Helix 8
8
A
463 474Right-handed alpha
Helix 9
9
A
499 512Right-handed alpha
Helix 10
10
A
514 524Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3MPK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 353first strand
Strand 2
A
308 314parallel
Strand 3
A
370 375parallel
Strand 4
A
489 496anti-parallel
Strand 5
A
384 386anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 353first strand
Strand 2
A
308 314parallel
Strand 3
A
370 375parallel
Strand 4
A
489 496anti-parallel
Strand 5
A
391 393anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
316 317first strand
Strand 2
A
321 322anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 441first strand
Strand 2
A
416 420parallel
Strand 3
A
458 462parallel
Strand 4
A
395 400anti-parallel
Strand 5
A
478 483anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il