Analysis of interatomic Contacts of Structural Units in PDB entry:
3MPV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MPV entry

There are 2 chains in PDB entry 3MPV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ILE 216
B
 PRO 2ILE 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3MPV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 28Right-handed alpha
Helix 2
2
A
45 56Right-handed alpha
Helix 3
3
A
93 109Right-handed alpha
Helix 4
4
A
154 167Right-handed alpha
Helix 5
5
A
194 214Right-handed alpha
Helix 6
6
B
21 28Right-handed alpha
Helix 7
7
B
44 59Right-handed alpha
Helix 8
8
B
92 109Right-handed alpha
Helix 9
9
B
154 169Right-handed alpha
Helix 10
10
B
193 214Right-handed alpha
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There are 5 sheets in PDB entry 3MPV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 17first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
86 90anti-parallel
Strand 4
A
62 63anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
123 129anti-parallel
Strand 3
A
148 153anti-parallel
Strand 4
A
186 191anti-parallel
Strand 5
A
172 173anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
84 90anti-parallel
Strand 4
B
62 67anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
123 124anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
148 151anti-parallel
Strand 3
B
188 192anti-parallel
Strand 4
B
171 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il