Analysis of interatomic Contacts of Structural Units in PDB entry:
3MQ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MQ3 entry

There is 1 chain in PDB entry 3MQ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11GLN 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 3MQ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 19Right-handed alpha
Helix 2
2
A
78 95Right-handed alpha
Helix 3
3
A
98 108Right-handed alpha
Helix 4
4
A
133 150Right-handed alpha
Helix 5
5
A
160 183Right-handed alpha
Helix 6
6
A
186 199Right-handed alpha
Helix 7
7
A
247 256Right-handed alpha
Helix 8
8
A
257 258Right-handed 310
Helix 9
9
A
259 263Right-handed 310
Helix 10
10
A
285 288Right-handed 310
Helix 11
11
A
290 298Right-handed alpha
Helix 12
12
A
346 351Right-handed alpha
Helix 13
13
A
354 367Right-handed alpha
Helix 14
14
A
406 416Right-handed alpha
Helix 15
15
A
439 443Right-handed 310
Helix 16
16
A
455 462Right-handed alpha
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There are 4 sheets in PDB entry 3MQ3. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
38 46anti-parallel
Strand 3
A
447 454anti-parallel
Strand 4
A
339 345anti-parallel
Strand 5
A
222 228anti-parallel
Strand 6
A
234 238anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
200 201anti-parallel
Strand 5
A
282 283anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 121first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
203 209anti-parallel
Strand 5
A
212 218anti-parallel
Strand 6
A
329 334anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
271 272anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il