Analysis of interatomic Contacts of Structural Units in PDB entry:
3MS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MS5 entry

There is 1 chain in PDB entry 3MS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLU 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 3MS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 3Right-handed 310
Helix 2
2
A
31 37Right-handed alpha
Helix 3
3
A
54 58Right-handed 310
Helix 4
4
A
88 94Right-handed alpha
Helix 5
5
A
97 110Right-handed alpha
Helix 6
6
A
127 133Right-handed alpha
Helix 7
7
A
133 148Right-handed alpha
Helix 8
8
A
160 170Right-handed alpha
Helix 9
9
A
191 195Right-handed 310
Helix 10
10
A
234 245Right-handed alpha
Helix 11
11
A
245 255Right-handed alpha
Helix 12
12
A
303 305Right-handed 310
Helix 13
13
A
306 323Right-handed alpha
Helix 14
14
A
368 384Right-handed alpha
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There are 7 sheets in PDB entry 3MS5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
26 30anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
50 51anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
73 77anti-parallel
Strand 3
A
83 87anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 126first strand
Strand 2
A
149 153parallel
Strand 3
A
337 341anti-parallel
Strand 4
A
214 221anti-parallel
Strand 5
A
361 367anti-parallel
Strand 6
A
181 183anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
345 349anti-parallel
Strand 3
A
229 233anti-parallel
Strand 4
A
328 330anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 264first strand
Strand 2
A
268 276anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
286 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il