Analysis of interatomic Contacts of Structural Units in PDB entry:
3MVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MVG entry

There are 2 chains in PDB entry 3MVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 1ARG 251
B
 ILE 1TRP 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3MVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 28Right-handed alpha
Helix 2
2
A
45 47Right-handed 310
Helix 3
3
A
91 96Right-handed alpha
Helix 4
4
A
107 116Right-handed alpha
Helix 5
5
A
118 122Right-handed 310
Helix 6
6
A
125 139Right-handed alpha
Helix 7
7
A
145 165Right-handed alpha
Helix 8
8
A
165 174Right-handed alpha
Helix 9
9
A
191 200Right-handed alpha
Helix 10
10
A
200 211Right-handed alpha
Helix 11
11
A
235 241Right-handed alpha
Helix 12
12
B
12 28Right-handed alpha
Helix 13
13
B
91 96Right-handed alpha
Helix 14
14
B
107 116Right-handed alpha
Helix 15
15
B
118 122Right-handed 310
Helix 16
16
B
125 139Right-handed alpha
Helix 17
17
B
145 165Right-handed alpha
Helix 18
18
B
165 174Right-handed alpha
Helix 19
19
B
191 200Right-handed alpha
Helix 20
20
B
200 211Right-handed alpha
Helix 21
21
B
235 241Right-handed alpha
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There are 8 sheets in PDB entry 3MVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
49 55parallel
Strand 3
A
61 67anti-parallel
Strand 4
A
73 78anti-parallel
Strand 5
A
81 84anti-parallel
Strand 6
A
100 101parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
36 37anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
184 185anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 223first strand
Strand 2
A
229 234anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
49 55parallel
Strand 3
B
61 67anti-parallel
Strand 4
B
73 78anti-parallel
Strand 5
B
81 84anti-parallel
Strand 6
B
100 101parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
36 37anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
184 185anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 223first strand
Strand 2
B
229 234anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il