Analysis of interatomic Contacts of Structural Units in PDB entry:
3MVK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3MVK entry

There are 10 chains in PDB entry 3MVK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	VAL 144
B	ILE 5	VAL 144
C	ILE 5	PHE 145
D	ILE 5	PHE 145
E	ILE 5	PHE 145
F	ILE 5	VAL 144
G	LYS 3	PHE 145
H	ILE 5	PHE 145
I	ILE 5	PHE 145
J	ILE 5	PHE 145

There are 60 helices in PDB entry 3MVK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	10	20	Right-handed alpha
Helix 2	2	A	34	39	Right-handed alpha
Helix 3	3	A	51	63	Right-handed alpha
Helix 4	4	A	86	100	Right-handed alpha
Helix 5	5	A	102	105	Right-handed 310
Helix 6	6	A	111	120	Right-handed alpha
Helix 7	7	B	10	20	Right-handed alpha
Helix 8	8	B	34	39	Right-handed alpha
Helix 9	9	B	51	63	Right-handed alpha
Helix 10	10	B	87	98	Right-handed alpha
Helix 11	11	B	102	105	Right-handed 310
Helix 12	12	B	111	120	Right-handed alpha
Helix 13	13	C	10	20	Right-handed alpha
Helix 14	14	C	34	39	Right-handed alpha
Helix 15	15	C	51	61	Right-handed alpha
Helix 16	16	C	86	98	Right-handed alpha
Helix 17	17	C	102	105	Right-handed 310
Helix 18	18	C	111	120	Right-handed alpha
Helix 19	19	D	10	20	Right-handed alpha
Helix 20	20	D	34	39	Right-handed alpha
Helix 21	21	D	51	61	Right-handed alpha
Helix 22	22	D	86	100	Right-handed alpha
Helix 23	23	D	102	105	Right-handed 310
Helix 24	24	D	111	120	Right-handed alpha
Helix 25	25	E	10	20	Right-handed alpha
Helix 26	26	E	34	39	Right-handed alpha
Helix 27	27	E	51	63	Right-handed alpha
Helix 28	28	E	86	98	Right-handed alpha
Helix 29	29	E	102	105	Right-handed 310
Helix 30	30	E	111	120	Right-handed alpha
Helix 31	31	F	10	20	Right-handed alpha
Helix 32	32	F	34	39	Right-handed alpha
Helix 33	33	F	51	61	Right-handed alpha
Helix 34	34	F	87	100	Right-handed alpha
Helix 35	35	F	102	105	Right-handed 310
Helix 36	36	F	111	120	Right-handed alpha
Helix 37	37	G	10	20	Right-handed alpha
Helix 38	38	G	34	39	Right-handed alpha
Helix 39	39	G	51	61	Right-handed alpha
Helix 40	40	G	87	98	Right-handed alpha
Helix 41	41	G	102	105	Right-handed 310
Helix 42	42	G	111	120	Right-handed alpha
Helix 43	43	H	10	20	Right-handed alpha
Helix 44	44	H	34	39	Right-handed alpha
Helix 45	45	H	51	61	Right-handed alpha
Helix 46	46	H	87	98	Right-handed alpha
Helix 47	47	H	102	105	Right-handed 310
Helix 48	48	H	111	120	Right-handed alpha
Helix 49	49	I	10	20	Right-handed alpha
Helix 50	50	I	34	39	Right-handed alpha
Helix 51	51	I	51	61	Right-handed alpha
Helix 52	52	I	86	98	Right-handed alpha
Helix 53	53	I	102	105	Right-handed 310
Helix 54	54	I	111	120	Right-handed alpha
Helix 55	55	J	10	20	Right-handed alpha
Helix 56	56	J	34	39	Right-handed alpha
Helix 57	57	J	51	61	Right-handed alpha
Helix 58	58	J	87	98	Right-handed alpha
Helix 59	59	J	102	105	Right-handed 310
Helix 60	60	J	111	120	Right-handed alpha

There are 10 sheets in PDB entry 3MVK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	124	128	parallel
Strand 3	A	25	29	parallel
Strand 4	A	137	140	anti-parallel
Strand 5	A	73	76	anti-parallel
Strand 6	A	107	110	parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	124	128	parallel
Strand 3	B	25	29	parallel
Strand 4	B	137	140	anti-parallel
Strand 5	B	73	76	anti-parallel
Strand 6	B	107	110	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	124	128	parallel
Strand 3	C	25	29	parallel
Strand 4	C	137	140	anti-parallel
Strand 5	C	73	76	anti-parallel
Strand 6	C	107	110	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	124	128	parallel
Strand 3	D	25	29	parallel
Strand 4	D	137	140	anti-parallel
Strand 5	D	73	76	anti-parallel
Strand 6	D	107	110	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	47	first strand
Strand 2	E	124	128	parallel
Strand 3	E	25	29	parallel
Strand 4	E	137	140	anti-parallel
Strand 5	E	73	76	anti-parallel
Strand 6	E	107	110	parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	47	first strand
Strand 2	F	124	128	parallel
Strand 3	F	25	29	parallel
Strand 4	F	137	140	anti-parallel
Strand 5	F	73	76	anti-parallel
Strand 6	F	107	110	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	47	first strand
Strand 2	G	124	128	parallel
Strand 3	G	25	29	parallel
Strand 4	G	137	140	anti-parallel
Strand 5	G	73	76	anti-parallel
Strand 6	G	107	110	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	47	first strand
Strand 2	H	124	128	parallel
Strand 3	H	25	29	parallel
Strand 4	H	137	140	anti-parallel
Strand 5	H	73	76	anti-parallel
Strand 6	H	107	110	parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	47	first strand
Strand 2	I	124	128	parallel
Strand 3	I	25	29	parallel
Strand 4	I	137	140	anti-parallel
Strand 5	I	73	76	anti-parallel
Strand 6	I	107	110	parallel

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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	47	first strand
Strand 2	J	124	128	parallel
Strand 3	J	25	29	parallel
Strand 4	J	137	140	anti-parallel
Strand 5	J	73	76	anti-parallel
Strand 6	J	107	110	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3MVK

Analysis of interatomic Contacts of Structural Units in PDB entry:
3MVK