Analysis of interatomic Contacts of Structural Units in PDB entry:
3MYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MYD entry

There is 1 chain in PDB entry 3MYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 385ASN 732
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3MYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
387 394Right-handed alpha
Helix 2
2
A
404 410Right-handed 310
Helix 3
3
A
411 415Right-handed 310
Helix 4
4
A
417 424Right-handed alpha
Helix 5
5
A
424 434Right-handed alpha
Helix 6
6
A
502 504Right-handed 310
Helix 7
7
A
505 512Right-handed alpha
Helix 8
8
A
518 534Right-handed alpha
Helix 9
9
A
535 539Right-handed 310
Helix 10
10
A
540 553Right-handed alpha
Helix 11
11
A
555 562Right-handed alpha
Helix 12
12
A
563 565Right-handed 310
Helix 13
13
A
566 580Right-handed alpha
Helix 14
14
A
586 598Right-handed alpha
Helix 15
15
A
599 602Right-handed 310
Helix 16
16
A
604 615Right-handed alpha
Helix 17
17
A
616 625Right-handed alpha
Helix 18
18
A
637 647Right-handed alpha
Helix 19
19
A
660 681Right-handed alpha
Helix 20
20
A
691 693Right-handed 310
Helix 21
21
A
694 706Right-handed alpha
Helix 22
22
A
715 717Right-handed 310
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There are 5 sheets in PDB entry 3MYD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 444first strand
Strand 2
A
398 402parallel
Strand 3
A
452 457anti-parallel
Strand 4
A
460 466anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 490first strand
Strand 2
A
497 501anti-parallel
Strand 3
A
472 475anti-parallel
Strand 4
A
515 517anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 636first strand
Strand 2
A
722 729parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
648 651first strand
Strand 2
A
654 657anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
686 690first strand
Strand 2
A
709 713parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il