Analysis of interatomic Contacts of Structural Units in PDB entry:
3MYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MYP entry

There are 4 chains in PDB entry 3MYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4GLN 324
B
 SER 4GLN 324
C
 SER 4GLN 324
D
 SER 4GLN 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3MYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 13Right-handed alpha
Helix 2
2
A
29 41Right-handed alpha
Helix 3
3
A
45 61Right-handed alpha
Helix 4
4
A
73 80Right-handed alpha
Helix 5
5
A
112 118Right-handed alpha
Helix 6
6
A
135 156Right-handed alpha
Helix 7
7
A
176 195Right-handed alpha
Helix 8
8
A
196 200Right-handed 310
Helix 9
9
A
211 215Right-handed 310
Helix 10
10
A
226 240Right-handed alpha
Helix 11
11
A
253 267Right-handed alpha
Helix 12
12
A
277 282Right-handed alpha
Helix 13
13
A
282 292Right-handed alpha
Helix 14
14
A
292 301Right-handed alpha
Helix 15
15
A
302 319Right-handed alpha
Helix 16
16
B
4 15Right-handed alpha
Helix 17
17
B
29 38Right-handed alpha
Helix 18
18
B
45 61Right-handed alpha
Helix 19
19
B
62 64Right-handed 310
Helix 20
20
B
74 80Right-handed alpha
Helix 21
21
B
112 118Right-handed alpha
Helix 22
22
B
135 157Right-handed alpha
Helix 23
23
B
176 194Right-handed alpha
Helix 24
24
B
195 200Right-handed 310
Helix 25
25
B
211 215Right-handed 310
Helix 26
26
B
226 239Right-handed alpha
Helix 27
27
B
253 267Right-handed alpha
Helix 28
28
B
277 282Right-handed alpha
Helix 29
29
B
282 292Right-handed alpha
Helix 30
30
B
293 302Right-handed alpha
Helix 31
31
B
302 319Right-handed alpha
Helix 32
32
C
4 12Right-handed alpha
Helix 33
33
C
29 37Right-handed alpha
Helix 34
34
C
45 61Right-handed alpha
Helix 35
35
C
74 81Right-handed alpha
Helix 36
36
C
112 118Right-handed alpha
Helix 37
37
C
135 156Right-handed alpha
Helix 38
38
C
176 195Right-handed alpha
Helix 39
39
C
196 200Right-handed 310
Helix 40
40
C
211 215Right-handed 310
Helix 41
41
C
226 241Right-handed alpha
Helix 42
42
C
253 268Right-handed alpha
Helix 43
43
C
277 282Right-handed 310
Helix 44
44
C
283 292Right-handed alpha
Helix 45
45
C
292 317Right-handed alpha
Helix 46
46
D
4 13Right-handed alpha
Helix 47
47
D
29 40Right-handed alpha
Helix 48
48
D
45 61Right-handed alpha
Helix 49
49
D
62 64Right-handed 310
Helix 50
50
D
74 80Right-handed alpha
Helix 51
51
D
112 119Right-handed alpha
Helix 52
52
D
135 156Right-handed alpha
Helix 53
53
D
176 196Right-handed alpha
Helix 54
54
D
197 200Right-handed 310
Helix 55
55
D
211 215Right-handed 310
Helix 56
56
D
226 240Right-handed alpha
Helix 57
57
D
253 267Right-handed alpha
Helix 58
58
D
277 282Right-handed alpha
Helix 59
59
D
283 301Right-handed alpha
Helix 60
60
D
302 317Right-handed alpha
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There are 4 sheets in PDB entry 3MYP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 26first strand
Strand 2
A
66 69parallel
Strand 3
A
88 90parallel
Strand 4
A
123 130parallel
Strand 5
A
160 166parallel
Strand 6
A
203 206parallel
Strand 7
A
245 248parallel
Strand 8
A
273 276parallel
Strand 9
A
21 26parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
66 69parallel
Strand 3
B
86 90parallel
Strand 4
B
123 130parallel
Strand 5
B
160 166parallel
Strand 6
B
203 206parallel
Strand 7
B
245 248parallel
Strand 8
B
273 276parallel
Strand 9
B
21 26parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
21 25first strand
Strand 2
C
66 69parallel
Strand 3
C
86 90parallel
Strand 4
C
123 130parallel
Strand 5
C
160 166parallel
Strand 6
C
203 206parallel
Strand 7
C
245 248parallel
Strand 8
C
273 276parallel
Strand 9
C
21 25parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
21 25first strand
Strand 2
D
66 69parallel
Strand 3
D
86 90parallel
Strand 4
D
123 130parallel
Strand 5
D
160 166parallel
Strand 6
D
203 206parallel
Strand 7
D
245 248parallel
Strand 8
D
273 276parallel
Strand 9
D
21 25parallel
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