Analysis of interatomic Contacts of Structural Units in PDB entry:
3MZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MZF entry

There is 1 chain in PDB entry 3MZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3PHE 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 3MZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 44Right-handed 310
Helix 2
2
A
45 60Right-handed alpha
Helix 3
3
A
72 84Right-handed 310
Helix 4
4
A
99 108Right-handed alpha
Helix 5
5
A
111 124Right-handed alpha
Helix 6
6
A
125 140Right-handed alpha
Helix 7
7
A
161 176Right-handed alpha
Helix 8
8
A
176 181Right-handed alpha
Helix 9
9
A
182 185Right-handed 310
Helix 10
10
A
199 204Right-handed 310
Helix 11
11
A
244 248Right-handed 310
Helix 12
12
A
249 262Right-handed alpha
Helix 13
13
A
304 308Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 3MZF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
233 242anti-parallel
Strand 4
A
221 230anti-parallel
Strand 5
A
208 217anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 70first strand
Strand 2
A
96 98anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
193 196anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 269first strand
Strand 2
A
296 301anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 314first strand
Strand 2
A
328 336anti-parallel
Strand 3
A
339 348anti-parallel
Strand 4
A
287 291anti-parallel
Strand 5
A
276 281anti-parallel
Strand 6
A
319 320parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il