Analysis of interatomic Contacts of Structural Units in PDB entry:
3MZI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3MZI entry

There are 6 chains in PDB entry 3MZI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 141
B
 SER 2GLU 141
C
 SER 2GLU 141
D
 SER 2GLU 141
E
 SER 2GLU 141
F
 SER 2GLU 141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3MZI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 32Right-handed alpha
Helix 2
2
A
33 36Right-handed 310
Helix 3
3
A
56 67Right-handed alpha
Helix 4
4
A
107 114Right-handed alpha
Helix 5
5
A
125 140Right-handed alpha
Helix 6
6
B
17 26Right-handed alpha
Helix 7
7
B
30 36Right-handed alpha
Helix 8
8
B
56 67Right-handed alpha
Helix 9
9
B
105 114Right-handed alpha
Helix 10
10
B
120 124Right-handed 310
Helix 11
11
B
125 138Right-handed alpha
Helix 12
12
C
21 29Right-handed alpha
Helix 13
13
C
31 35Right-handed 310
Helix 14
14
C
56 67Right-handed alpha
Helix 15
15
C
103 114Right-handed alpha
Helix 16
16
C
120 124Right-handed 310
Helix 17
17
C
125 140Right-handed alpha
Helix 18
18
D
17 29Right-handed alpha
Helix 19
19
D
56 64Right-handed alpha
Helix 20
20
D
105 114Right-handed alpha
Helix 21
21
D
120 124Right-handed 310
Helix 22
22
D
125 140Right-handed alpha
Helix 23
23
E
17 32Right-handed alpha
Helix 24
24
E
56 68Right-handed alpha
Helix 25
25
E
103 114Right-handed alpha
Helix 26
26
E
120 124Right-handed 310
Helix 27
27
E
125 140Right-handed alpha
Helix 28
28
F
19 29Right-handed alpha
Helix 29
29
F
31 35Right-handed 310
Helix 30
30
F
56 69Right-handed alpha
Helix 31
31
F
103 112Right-handed alpha
Helix 32
32
F
125 140Right-handed alpha
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There are 6 sheets in PDB entry 3MZI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 82first strand
Strand 2
A
3 12anti-parallel
Strand 3
A
47 55anti-parallel
Strand 4
A
38 44anti-parallel
Strand 5
A
94 97parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
47 55anti-parallel
Strand 3
B
3 12anti-parallel
Strand 4
B
72 81anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 82first strand
Strand 2
C
3 12anti-parallel
Strand 3
C
47 55anti-parallel
Strand 4
C
38 44anti-parallel
Strand 5
C
95 97parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 82first strand
Strand 2
D
3 10anti-parallel
Strand 3
D
47 55anti-parallel
Strand 4
D
41 44anti-parallel
Strand 5
D
95 97parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
76 82first strand
Strand 2
E
3 11anti-parallel
Strand 3
E
47 55anti-parallel
Strand 4
E
38 44anti-parallel
Strand 5
E
95 97parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
72 82first strand
Strand 2
F
3 12anti-parallel
Strand 3
F
47 55anti-parallel
Strand 4
F
37 43anti-parallel
Strand 5
F
94 97parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il